Glyma17g08810 - SoyBase

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Report for Sequence Feature Glyma17g08810

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6489690
stop:	6496820
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39040	AT	Annotation by Michelle Graham. TAIR10: transporter associated with antigen processing protein 2 \| chr5:15625660-15629621 FORWARD LENGTH=644	SoyBase	E_val: 0	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0035672	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015421	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oligopeptide-transporting ATPase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0058	KOG	Peptide exporter, ABC superfamily	JGI		ISS
PTHR24221	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24221:SF123	Panther		JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF00664	PFAM	ABC transporter transmembrane region	JGI		ISS
UniRef100_B9N4E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter family protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9N4E9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT85_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08810

Paralog	Evidence	Comments
Glyma05g00240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g080400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08810

Limit To All Plant Sequences

>Glyma17g08810.1   sequence type=CDS   gene model=Glyma17g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGGCTTAAGAAGTGAAAGAGCCCCTCTCTTGGAGGCTGAGCGTGCTGGAAGAGGAAAGAGGGATGGTGCCTCGGAAGGTCAAGCCTCAGACCTTGAGCATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTGTAGGGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATCGGTACTGTGGCTCTGTTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTAGGGAAATGAAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATCTTTCTGGTCGTTGTCTTCGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGACTGAGAAAGAATTTGTTCAGTCATCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAGCTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTTGCTTCATCAATAGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAGTAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAATTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTCATTATAGTTGTTATATATGGAGCTAATTTGACAATCAAGGGTTCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCGGGAGATAAATGTCCACTGGGTGATCACGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGAACAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTGATTGAAAGATTTTATGATCCAACCAAGGGAAAGATTGTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAATGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCTGAAAGCGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCCACAGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAGCAAGAACGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAGCCGAAATCTCGGTTTAG

Predicted protein sequences of Glyma17g08810

Limit To All Plant Sequences

>Glyma17g08810.1   sequence type=predicted peptide   gene model=Glyma17g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGLRSERAPLLEAERAGRGKRDGASEGQASDLEHGDAVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSREMKTPEEKDEALNAVKNTILEIFLVVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEVTRYSEKVNETLNLGLKQAKIVGLFSGGLNAASTLSVIIVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDHDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGTKVALVGPSGGGKSTIANLIERFYDPTKGKIVLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLSKNGVYTALVKRQLQTTKAEISV*

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