Glyma17g08701 - SoyBase

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Report for Sequence Feature Glyma17g08701

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6414756
stop:	6416593
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08701

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08040	AT	Annotation by Michelle Graham. TAIR10: mitochondrial import receptor subunit TOM5 homolog \| chr5:2577358-2578073 REVERSE LENGTH=54	SoyBase	E_val: 2.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MT74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT74_SOYBN	SoyBase	E_val: 5.00E-30	ISS
UniRef100_Q9SD80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import receptor subunit TOM5 homolog n=2 Tax=Arabidopsis thaliana RepID=TOM5_ARATH	SoyBase	E_val: 1.00E-14	ISS

Expression Patterns of Glyma17g08701

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08701 not represented in the dataset	Glyma17g08701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08701

Paralog	Evidence	Comments
Glyma05g00341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08701 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g079100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08701

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08701

Limit To All Plant Sequences

>Glyma17g08701.1   sequence type=CDS   gene model=Glyma17g08701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACTCTGTAATTTCGATTCAGTACCTTAAAGATTTCGTCAATTCTCAAATCTACGACGATGAGAAGTGGGCCTTCAATGCGAAATTGCTGCGTGCTGCTGGATTGTTTGCAGGATCAATATTACTTATGCGAAACTATGGTGACCTTATGGCAATTTGA

Predicted protein sequences of Glyma17g08701

Limit To All Plant Sequences

>Glyma17g08701.1   sequence type=predicted peptide   gene model=Glyma17g08701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSVISIQYLKDFVNSQIYDDEKWAFNAKLLRAAGLFAGSILLMRNYGDLMAI*

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