Report for Sequence Feature Glyma17g08691
Feature Type: gene_model
Chromosome: Gm17
Start: 6410461
stop: 6412369
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g08691
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G29575 AT
Annotation by Michelle Graham. TAIR10: ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231
SoyBase E_val: 7.00E-13 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009738 GO-bp
Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF07897 PFAM
Protein of unknown function (DUF1675)
JGI ISS
UniRef100_B9RLN0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLN0_RICCO
SoyBase E_val: 2.00E-16 ISS
UniRef100_I1MT73 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT73_SOYBN
SoyBase E_val: 6.00E-43 ISS
Expression Patterns of Glyma17g08691
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g08691
Paralog Evidence Comments
Glyma05g00351 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g08691 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g079000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g08691
Transcripts of Glyma17g08691
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g08691.2 sequence type=transcript gene model=Glyma17g08691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAGAATGTGCAGAAGCAGCTAACACCCCTTTTAGATTGTGTAGAAGCAGCTAAGCATCCCTATAGTTTTGCAAAATTAGTACCTTATCCATGGTTCTAATGACAGTGTAAAGGGAAGTTTTCATCAAAGACAAATATGATTTTAATTTCGTTTTTG
Coding sequences of Glyma17g08691
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g08691.1 sequence type=CDS gene model=Glyma17g08691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGCAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAG
>Glyma17g08691.2 sequence type=CDS gene model=Glyma17g08691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAG
Predicted protein sequences of Glyma17g08691
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g08691.1 sequence type=predicted peptide gene model=Glyma17g08691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
VEILVTLFPSVLQVDTIFNFSFIQILCLRLVCPFFFQREYRYSSKELFCLMASPFSSWISMEEQGFYSKKPYTYTNSEHIDLTLKLSPCGQNAEEEEEEEEEEEEKMVEKGLVRFGDLQTMRRVKTWKRLLMKKMRMAAAKEAEKSLPVSPGGGAQTLPHSIYNSLKTFANPCGDAWHEGAMQEMTLWPSETMIENERPAKKLKHVNSYQESDAMPSVITTGDGTITGKRTVCIVCVCHGSFPSPTEFVMHAGGKEVADPMKHITVCSDSFGINGDGAAFITHPF*
>Glyma17g08691.2 sequence type=predicted peptide gene model=Glyma17g08691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
VEILVTLFPSVLQVDTIFNFSFIQILCLRLVCPFFFQREYRYSSKELFCLMASPFSSWISMEEGFYSKKPYTYTNSEHIDLTLKLSPCGQNAEEEEEEEEEEEEKMVEKGLVRFGDLQTMRRVKTWKRLLMKKMRMAAAKEAEKSLPVSPGGGAQTLPHSIYNSLKTFANPCGDAWHEGAMQEMTLWPSETMIENERPAKKLKHVNSYQESDAMPSVITTGDGTITGKRTVCIVCVCHGSFPSPTEFVMHAGGKEVADPMKHITVCSDSFGINGDGAAFITHPF*