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Report for Sequence Feature Glyma17g08691

Feature Type:gene_model
Chromosome:Gm17
Start:6410461
stop:6412369
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g08691
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G29575AT Annotation by Michelle Graham. TAIR10: ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231 SoyBaseE_val: 7.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF07897PFAM Protein of unknown function (DUF1675) JGI ISS
UniRef100_B9RLN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLN0_RICCO SoyBaseE_val: 2.00E-16ISS
UniRef100_I1MT73UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT73_SOYBN SoyBaseE_val: 6.00E-43ISS

Expression Patterns of Glyma17g08691
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08691 not represented in the dataset
Glyma17g08691 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08691
ParalogEvidenceComments
Glyma05g00351 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08691 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g079000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g08691
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g08691
>Glyma17g08691.2   sequence type=transcript   gene model=Glyma17g08691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAGAATGTGCAGAAGCAGCTAACACCCCTTTTAGATTGTGTAGAAGCAGCTAAGCATCCCTATAGTTTTGCAAAATTAGTACCTTATCCATGGTTCTAATGACAGTGTAAAGGGAAGTTTTCATCAAAGACAAATATGATTTTAATTTCGTTTTTG
Coding sequences of Glyma17g08691
>Glyma17g08691.1   sequence type=CDS   gene model=Glyma17g08691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGCAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAG

>Glyma17g08691.2   sequence type=CDS   gene model=Glyma17g08691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGAAATCCTCGTTACTCTATTTCCCTCTGTGTTGCAAGTGGATACGATTTTCAATTTTTCATTCATCCAAATTTTATGTCTAAGACTTGTTTGTCCTTTTTTCTTTCAAAGGGAATACAGGTATTCTTCAAAGGAGTTGTTCTGTTTAATGGCTTCACCTTTCTCTTCTTGGATTTCAATGGAGGAGGGATTTTATTCTAAGAAACCATACACATACACTAACTCTGAGCATATAGACCTTACTCTCAAGCTTTCTCCCTGCGGTCAAAATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGTTGAGAAGGGTCTGGTGAGGTTTGGGGACTTGCAGACAATGAGAAGAGTGAAGACTTGGAAGAGATTATTGATGAAGAAGATGCGAATGGCTGCGGCGAAGGAGGCAGAGAAGTCTCTTCCGGTGTCTCCGGGCGGTGGTGCTCAGACTCTACCTCACTCAATTTATAACAGTCTCAAGACATTTGCAAATCCTTGTGGGGATGCATGGCATGAGGGAGCAATGCAGGAAATGACACTGTGGCCCTCTGAGACTATGATTGAGAATGAGAGGCCAGCCAAAAAGCTTAAGCATGTGAATTCCTATCAAGAAAGTGATGCAATGCCTAGTGTGATTACTACTGGAGATGGCACCATTACTGGGAAGAGAACAGTTTGTATTGTATGTGTCTGCCATGGCAGCTTCCCCTCCCCAACAGAATTCGTGATGCATGCTGGTGGTAAGGAAGTGGCAGATCCCATGAAACACATCACTGTTTGTTCTGATTCATTTGGTATCAATGGAGATGGGGCTGCTTTTATCACACACCCCTTTTAG
Predicted protein sequences of Glyma17g08691
>Glyma17g08691.1   sequence type=predicted peptide   gene model=Glyma17g08691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VEILVTLFPSVLQVDTIFNFSFIQILCLRLVCPFFFQREYRYSSKELFCLMASPFSSWISMEEQGFYSKKPYTYTNSEHIDLTLKLSPCGQNAEEEEEEEEEEEEKMVEKGLVRFGDLQTMRRVKTWKRLLMKKMRMAAAKEAEKSLPVSPGGGAQTLPHSIYNSLKTFANPCGDAWHEGAMQEMTLWPSETMIENERPAKKLKHVNSYQESDAMPSVITTGDGTITGKRTVCIVCVCHGSFPSPTEFVMHAGGKEVADPMKHITVCSDSFGINGDGAAFITHPF*

>Glyma17g08691.2   sequence type=predicted peptide   gene model=Glyma17g08691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VEILVTLFPSVLQVDTIFNFSFIQILCLRLVCPFFFQREYRYSSKELFCLMASPFSSWISMEEGFYSKKPYTYTNSEHIDLTLKLSPCGQNAEEEEEEEEEEEEKMVEKGLVRFGDLQTMRRVKTWKRLLMKKMRMAAAKEAEKSLPVSPGGGAQTLPHSIYNSLKTFANPCGDAWHEGAMQEMTLWPSETMIENERPAKKLKHVNSYQESDAMPSVITTGDGTITGKRTVCIVCVCHGSFPSPTEFVMHAGGKEVADPMKHITVCSDSFGINGDGAAFITHPF*






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