Glyma17g08660 - SoyBase

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Report for Sequence Feature Glyma17g08660

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6394741
stop:	6398087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08020	AT	Annotation by Michelle Graham. TAIR10: RPA70-kDa subunit B \| chr5:2572107-2574879 FORWARD LENGTH=604	SoyBase	E_val: 0	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016444	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG0851	KOG	Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins	JGI		ISS
PTHR23273	Panther	REPLICATION FACTOR A 1, RFA1	JGI		ISS
PF01336	PFAM	OB-fold nucleic acid binding domain	JGI		ISS
PF04057	PFAM	Replication factor-A protein 1, N-terminal domain	JGI		ISS
PF08646	PFAM	Replication factor-A C terminal domain	JGI		ISS
UniRef100_B9RLN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9RLN2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MT69	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT69_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08660 not represented in the dataset	Glyma17g08660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08660

Paralog	Evidence	Comments
Glyma05g00370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g078700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08660

Limit To All Plant Sequences

>Glyma17g08660.2   sequence type=transcript   gene model=Glyma17g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACACTCCTCACTATACAAAAACATTTTCACTCTCACTCTCTCGTTATCTCTCATTCTCTCTGTTTTCTCCAAAGCAAAACCTTCCCTACACACTTTCAATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGAAGAGACAAAGGATAACAGTTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTCTGCTGGAAGATTTATCAAAGATGAGAGCATAAGATGGATATGCGGATTCACAGTTTCTACATTTTTTTGCTAACGGTTGTTTAGTATGTTACCGGTTGTAATTATTAATTAATTCCCTAGGTGGCTTATATTATACATTTTGCCGAGTTTTATAGAATATCTTTGCCATCCACATGGTTACTGATTTTCCATTATGTCATCAGTGATTCCTCAAAAAGCTTTGCCTCAATGAAAGTGATTTTTCTTTCAA

Coding sequences of Glyma17g08660

Limit To All Plant Sequences

>Glyma17g08660.1   sequence type=CDS   gene model=Glyma17g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTCTGATGCAAGCGCTGAGACTTATATCTCTGCCTTTAATCAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGAAGAGACAAAGGATAACAGTTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTCTGCTGGAAGATTTATCAAAGATGAGAGCATAA

>Glyma17g08660.2   sequence type=CDS   gene model=Glyma17g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAG

Predicted protein sequences of Glyma17g08660

Limit To All Plant Sequences

>Glyma17g08660.1   sequence type=predicted peptide   gene model=Glyma17g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKTVTPDAVSMLLANTCPDSSSDLPEIVVQVLDLKATGNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKSDKYLIVTKCEPVSPALEIEIKSEESGSGILLKSKVEGGVNTEGPAAAGILLKPKQVVTKSANQILREHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWYRACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKIIGCSADDLDNLKSQEGEVNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFLLEDLSKMRA*

>Glyma17g08660.2   sequence type=predicted peptide   gene model=Glyma17g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKTVTPDAVSMLLANTCPDSSSDLPEIVVQVLDLKATGNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKSDKYLIVTKCEPVSPALEIEIKSEESGSGILLKSKVEGGVNTEGPAAAGILLKPKQVVTKSANQILREHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWYRACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRKLRRSLDALLMI*

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