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Report for Sequence Feature Glyma17g08610

Feature Type:gene_model
Chromosome:Gm17
Start:6367936
stop:6375299
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g08610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64060AT Annotation by Michelle Graham. TAIR10: respiratory burst oxidase protein F | chr1:23770266-23776317 FORWARD LENGTH=944 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007231GO-bp Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0033500GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052542GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition SoyBaseN/AISS
GO:0072593GO-bp Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016174GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD(P)H oxidase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
GO:0050664GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor SoyBaseN/AISS
KOG0039 KOG Ferric reductase, NADH/NADPH oxidase and related proteins JGI ISS
PTHR11972Panther NADPH OXIDASE JGI ISS
PTHR11972:SF5Panther NADPH OXIDASE-RELATED JGI ISS
PF01794PFAM Ferric reductase like transmembrane component JGI ISS
PF08022PFAM FAD-binding domain JGI ISS
PF08030PFAM Ferric reductase NAD binding domain JGI ISS
PF08414PFAM Respiratory burst NADPH oxidase JGI ISS
UniRef100_B9SZS5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Respiratory burst oxidase, putative n=1 Tax=Ricinus communis RepID=B9SZS5_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MT65UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT65_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g08610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08610 not represented in the dataset
Glyma17g08610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08610
ParalogEvidenceComments
Glyma05g00420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g078300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g08610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g08610
>Glyma17g08610.1   sequence type=CDS   gene model=Glyma17g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGACTTGTAAAGTCTCAAGTTCCTCATGAACGTTCCCTCCTTGCTCTCTTCAAATCATCACCCTCTTCATCATCGTTATCTTCCTCATTCTCTTCTTCTTGGACCTCTGAAGTAGTCCTTCAGACAAGGTCCAAGATTCGGCGTGAAGGTGAGCCTAACAATGTAGCAGACTTGAGATCGGAACAAACACGTTCTCACATAATAGAAAATGAAGCAATTCAAGGTGTGGGATTCATCAATGGCATTGATGGTCACAGTGGAATGGAGTGGAAGGATTTGGAGAAACGGTTCGACCAGGTGGCACGAACCGGAAGTGGAGCCGAACCGGTTGTGACATGGTCCGAATTTGGCTTCTGCATTGGGATGCACTCATCACCAGAGTTTGCCAACGAATTACTCAGAGCACTGAGACGCGGCAAGGGCTGGAAATCCAATATCACCAAAACTGATTTGTACCATCTTTGGTTTCGGATGAAGGATAATTCTTTTAACTCAAGAATGCGAATATTCTTTGACATGTGTAACAGAAACAAGGATGGAAGAATTACCGAGACAGATATAAAGCAGACAATTTTATTAACCGCTTCTACAAATAAGCTATCCGTGACACATGATGAAGCAGAGGACTATGCTTCTTTGATCATGAAATTTCTAGACAAGAAAAACAAAGGCTACATTGAGATATCTCAAATGGGGTCTCTATTCAAGGCAACAAATCTATCAAATTCAAAGGCACATTCTCCAATGAAACAAGTATCATCAGTAGGTAGCAGCACACACAATGTTCTTCATAACACTAGCGGTGACTTTTGTGAAGAACAACAAGAACCAATGTCAAGGACTGAAGTTTTGTTCAGAACTTATTGGAGACGTGCTTGGATTGTTCTGGTTTGGTTGCTTGCATGCTTGGGATTGTTTGTGTGGAAATTTGTTCAATACCGCCATAGATCAGGGTTTGAAGTCATGGGTTATTGTCTTCCTACTGCTAAAGGTGCAGCTGAGACCTTAAAACTCAACATGGCTCTTGTTCTTCTTCCTGTTTGTAGAAACACAATCACGTGGCTCCGCAAACACCGTCCGATCAACTCTGTTGTTCCATTCAATGACAACATTAACTTCCACAAGCTTATTGCAGGAGGAATAGTGGTGGGTGTGATCCTGCACGGTGGAACGCACCTTGCGTGCGATTTCCCAAGAATCAGTGAGTCGGATAAATCAATATTCCGGCAAACTATTGCCGCAGGATTCGGGTACCACCGGCCAACGTACACGCAAATTTTGGCGACGACGGAGGTGGCCAGTGGGATAGGCATGGTGGTGTTAATGGGCATTGCATTTGCACTGGCAGCCAAGTGGCCACGGCGTCGGTCACCGGTGCTGCCGGTGTCCCTCCGTCGTGTCACTGGTTACAACACATTTTGGTACTCTCACCATTTGTTTGTCCTTGTCTATGCCCTGCTCATTATTCACTCCATGTTCTTGTTCCTAACCGACAAGTTGATGGAGAAAACGACATGGATGTACATTGCTTTTCCAGTTTTATTATACGCTGGGGAGAGGATCTTTCGAGCCATTAGATCTGGATCTTACGAAGTTGATATTTTGAAGGCAAGTATATGTCCAGGAAAAGTTTTGTACCTCAAAATGCAAAAACCAGAAGGTTTTAAGTTCCATAGTGGCATGTATATATTCATTCAGTGCCCCCAAATTTCGCCCTTTGAATGGCATCCATTTTCCTTGACTTCAGGGCCACAAGATGACTACCTCAGTGTGCACATTAGAACACTCGGAGACTGGAGCTACCAAATATATGATCTATTCCAAGAGGCAGTGTTATCACGATCAAAAGGGTGTCCAAAACTGTACATAGATGGCCCTTATGGTTCTGCTGCTCAAGACCATGTAAAGTACGACATTCTAGTACTAATTGGTCTTGGCATAGGAGCAACACCTTTCATTAGCATCCTTAAAGATGTAGTTAAAGGTGTCCAGACAACGCAAAATGATCATAGTGGTCTCAGACAATGCAGCCTAACAAAGGGTCCATTAAAAGCATATCTTTATTGGGTTACAAGAGAGCCAAACTCTTTTGACTGGTTTAGAGATGTCATGAAGGAAATCTCAAATTCAACTAAAAAACAGTCGGTTGTGGAGATGCACAATTTCCTGACAAGTGTACATCCAGAAGGAGATATTCGTTCAGCTTTGCTAAGTGTTATTCAGGCCTTGCATGTTGCCAAGAATGGCACTGACATAGTTTCCAGGACTCAAATACACACACATTTTGCTAGACCAAATTGGTTCAACATATTTTCTAGATTGGCTCGCAAGCATGGAGGAGCTAAGATTGGGGTTTTCTATTGTGGACCATCTAAATTAGCAAGAGAATTGAAGAAGTTGTGCACCAAATTTTCCACCAAAACCACAACTAGATTTGTTTTCCACAAGGAAAATTACTAA
Predicted protein sequences of Glyma17g08610
>Glyma17g08610.1   sequence type=predicted peptide   gene model=Glyma17g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGLVKSQVPHERSLLALFKSSPSSSSLSSSFSSSWTSEVVLQTRSKIRREGEPNNVADLRSEQTRSHIIENEAIQGVGFINGIDGHSGMEWKDLEKRFDQVARTGSGAEPVVTWSEFGFCIGMHSSPEFANELLRALRRGKGWKSNITKTDLYHLWFRMKDNSFNSRMRIFFDMCNRNKDGRITETDIKQTILLTASTNKLSVTHDEAEDYASLIMKFLDKKNKGYIEISQMGSLFKATNLSNSKAHSPMKQVSSVGSSTHNVLHNTSGDFCEEQQEPMSRTEVLFRTYWRRAWIVLVWLLACLGLFVWKFVQYRHRSGFEVMGYCLPTAKGAAETLKLNMALVLLPVCRNTITWLRKHRPINSVVPFNDNINFHKLIAGGIVVGVILHGGTHLACDFPRISESDKSIFRQTIAAGFGYHRPTYTQILATTEVASGIGMVVLMGIAFALAAKWPRRRSPVLPVSLRRVTGYNTFWYSHHLFVLVYALLIIHSMFLFLTDKLMEKTTWMYIAFPVLLYAGERIFRAIRSGSYEVDILKASICPGKVLYLKMQKPEGFKFHSGMYIFIQCPQISPFEWHPFSLTSGPQDDYLSVHIRTLGDWSYQIYDLFQEAVLSRSKGCPKLYIDGPYGSAAQDHVKYDILVLIGLGIGATPFISILKDVVKGVQTTQNDHSGLRQCSLTKGPLKAYLYWVTREPNSFDWFRDVMKEISNSTKKQSVVEMHNFLTSVHPEGDIRSALLSVIQALHVAKNGTDIVSRTQIHTHFARPNWFNIFSRLARKHGGAKIGVFYCGPSKLARELKKLCTKFSTKTTTRFVFHKENY*






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