Glyma17g08590 - SoyBase

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Report for Sequence Feature Glyma17g08590

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6360990
stop:	6364241
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74250	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr1:27920328-27922414 FORWARD LENGTH=630	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0717	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PTHR24078:SF10	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER 1	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF12171	PFAM	Zinc-finger double-stranded RNA-binding	JGI		ISS
UniRef100_I1MT63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT63_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C911	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNAJ heat shock N-terminal domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9C911_ARATH	SoyBase	E_val: 3.00E-179	ISS

Expression Patterns of Glyma17g08590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08590

Paralog	Evidence	Comments
Glyma05g00445	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g078100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08590

Limit To All Plant Sequences

>Glyma17g08590.2   sequence type=transcript   gene model=Glyma17g08590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATCAAATACACCCGCCCTTATTTTATCAATCACTATTTCACATACTTTCCATAAGAGCAAGGATTTGGTATTTTACCAGAAGACGCAAACCCGGAACCCTAACCTTGGGGACAGGCAACCAACAATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGAAGGAAACAACAGTTAGAATTATTCAAGTTAAGCGTTCCCCCGAGTATAAGGAGTATTGTTCCAGGTCCAGATATTGGCCTGCTCCAATTATTGGTCCATTCTTTAATTCTTAAAATATAGTGTTAAAATCATTTTCAAGTGATCCTTAGGCAGAAATCATTATGTTATTTATGCCACGGTTGAGAAAGATATGGATACAGGGTCTGCACAAATTTGACGGGATCCTTTTGTATGTCAACATAGTAATAGAGATTGGATGATTTAGTAATAGAGATTGAATGATTCTAAATTTTCCTTTTAATATTTTGAGATATTGGGTGTTTAAATTTGTTTGTCAAGATTTTTTTTTAATAAAATAAGCAGTTTCCTGCCTTTT

Coding sequences of Glyma17g08590

Limit To All Plant Sequences

>Glyma17g08590.1   sequence type=CDS   gene model=Glyma17g08590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAGGAGTGTGGAGGAGGAGAGGAAGAAGGAGGAGGAGAGGGAGAGGAAGAGGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCTATGGCGTACGAGGAGCCAGAGTGGGCTAAGGTTGACGAGGATGTGGAGGAGGTGGTTGAGGAGGAGGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGA

>Glyma17g08590.2   sequence type=CDS   gene model=Glyma17g08590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGA

Predicted protein sequences of Glyma17g08590

Limit To All Plant Sequences

>Glyma17g08590.1   sequence type=predicted peptide   gene model=Glyma17g08590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYTNTAKGFYKVYSDVFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKKEEERERKRRLEKEKKERAMAYEEPEWAKVDEDVEEVVEEEVEERENEELYCVLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDETDNGIGDLEARIKNGLNVEEGETRNGIELNDDDEFIDASRVKEGEEAGVSVSFDEDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENENDDELGPMEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIISNANDNSHAEESSSQHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKGRKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR*

>Glyma17g08590.2   sequence type=predicted peptide   gene model=Glyma17g08590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYTNTAKGFYKVYSDVFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVEERENEELYCVLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDETDNGIGDLEARIKNGLNVEEGETRNGIELNDDDEFIDASRVKEGEEAGVSVSFDEDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENENDDELGPMEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIISNANDNSHAEESSSQHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKGRKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR*

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