SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G61060 | AT | Annotation by Michelle Graham. TAIR10: histone deacetylase 5 | chr5:24567137-24570917 REVERSE LENGTH=660 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0016575 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone deacetylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004407 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity | SoyBase | N/A | ISS |
| KOG1342 | KOG | Histone deacetylase complex, catalytic component RPD3 | JGI | ISS | |
| PTHR10625 | Panther | HISTONE DEACETYLASE | JGI | ISS | |
| PTHR10625:SF22 | Panther | HISTONE DEACETYLASE-RELATED | JGI | ISS | |
| PF00850 | PFAM | Histone deacetylase domain | JGI | ISS | |
| UniRef100_B9H356 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Populus trichocarpa RepID=B9H356_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E52C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E52C related cluster n=1 Tax=unknown RepID=UPI000233E52C | SoyBase | E_val: 0 | ISS |
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Glyma17g08581 not represented in the dataset |
Glyma17g08581 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g00460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g078000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g08581.1 sequence type=CDS gene model=Glyma17g08581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCGTGAAAACGAGAACAGCGTCAACGCTCAACGCCGCGTGGGTTTACTCTACGACGAGACTATGTGTAAGCACCACACACCAGACGACGAGGACCATCCCGAGAACCCTAATCGCATCAGAGCCATTTGGAACAGACTCCAAAGCGCCGGCGTTCTCCAACGATGCGTGATTTTGGAGGCCAAAGAAGCTGAAGACAAACATCTACTGTTGGTGCATTCTATAAACCATGTGAATCTGATTAAGAACATCAGCTCAAAGCAGTTCAATTCGCGGAGGCATAAGATTGCCTCAAAATTGGGTTCCATATACTTTAACGAAGGTTCATCAGAGGCTGCGTACCTTGCCGCTGGCTCTGCAGTAGAGGTTGTTAAAAGAGTGGCAAGCAGGGAATTGGATTCTGCTGTTGCCATTGTTAGGCCTCCGGGTCATCATGCAGAACAACAAGAAGCTATGGGATTTTGTCTGTTCAACAATGTGGCAGTTGCTGCAAGATATCTCTTAGACGAAAGACCAGAATTAGGTGTGAAGAAAATATTAATTGTTGATTGGGATGTCCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGATTCTCGAGTTTTATTCTTTTCTGTTCACAGGCATGAGTTTGGGAGTTTTTATCCAGCTAATGATGATGGATTTTATACCATGATTGGAGAAGGAGCAGGTGCTGGATATAATATAAATGTCCCCTGGGAGAATGGGCGATGTGGTGATGCAGATTACTTTGCAGTGTGGGACCACATCTTGCTTCCTGTTGCTAAAGAATTTAATCCAGATATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGCCTTGTCACACCATTTGGTTATTCTGTTCTGTTGGAAAAGTTGATGAATTTTGCTGAAGGTAGGATTGTATTGATTCTAGAAGGTGGATATAATCTTGATTCCATCTCAAAATCAATGCATGCCTGCTTGGAAGTTTTGCTAGCAGACCAGCCTGTTATTGGATCTGCAGAGGCCTATCCATTTGAATCTACATGGCGTGTGATTCAAGCGGTTCGCCAGGTTTTAAGTCCCTTTTGGCCTACACTTGCACGTGAATTACCGCACAAGTTAATCTCACCAATGGCACCACCTCCGTATACTCTTATCTCGAGCTCTGACACTGAGGCTGAGGATGATAAGGGTGCACTAAGTTCAGAAAATCTTGTTGAACTTCTTGAGGATGTCATAAAACCACTTTCTGAACTGAAAGTTGATGCTGATAAAGAGACTGATGTTTCTAGTACTTGGCGATCGGAATTGTCAAATGTTTATATATGGTATGCCTCATATGGATCAAATATGTGGAAAGCAATATTAAATTGCCACCTAGCAGGTGGACAGGTGGAAGGCATGAAGAAGGACTGTTCTGGTTCAGTGAATAGAACTCTGCCAAAAGCGATCCTGTGGAAAACTTTCCCTTGTCATATATTTTTCGGTTGTGATTCATCACATTCATGGGGTGTGGGAGGTGTTGCATTTCTTAATCCTGAGAAAAACTTTCAGCACAACACCTACATGTGCCTGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTGTTTCAGGAAAATGCTTTAAGCCTTGATGCAGGCTCTCCTTTATTTGATATAACTACCGTGAATGCTATCTCTAACAAGGAGTTCAACTCTCTGGAGGTTGTCAAGGGTGCTTGGTATGGCAATGTTGTCTACTTAGGAAAGGAGCAGGATATTCCAGTAGTTACCATGACGTGTTCACTTCTTGATATTGGAAATTTCAAATCTGGGAAGCTACCCTTACGTGCCCCTAATAAAGCATATGCCAACACCTTAATAAAAGGGTTGGTTGATGGAGAACAGCTTTCAGAGGTGGAAGCCATCGCTTACATAGAAGGTGCTGCTAAATCATTGTAA
>Glyma17g08581.1 sequence type=predicted peptide gene model=Glyma17g08581 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERENENSVNAQRRVGLLYDETMCKHHTPDDEDHPENPNRIRAIWNRLQSAGVLQRCVILEAKEAEDKHLLLVHSINHVNLIKNISSKQFNSRRHKIASKLGSIYFNEGSSEAAYLAAGSAVEVVKRVASRELDSAVAIVRPPGHHAEQQEAMGFCLFNNVAVAARYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYTMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCLVTPFGYSVLLEKLMNFAEGRIVLILEGGYNLDSISKSMHACLEVLLADQPVIGSAEAYPFESTWRVIQAVRQVLSPFWPTLARELPHKLISPMAPPPYTLISSSDTEAEDDKGALSSENLVELLEDVIKPLSELKVDADKETDVSSTWRSELSNVYIWYASYGSNMWKAILNCHLAGGQVEGMKKDCSGSVNRTLPKAILWKTFPCHIFFGCDSSHSWGVGGVAFLNPEKNFQHNTYMCLYKISLEQFNDILFQENALSLDAGSPLFDITTVNAISNKEFNSLEVVKGAWYGNVVYLGKEQDIPVVTMTCSLLDIGNFKSGKLPLRAPNKAYANTLIKGLVDGEQLSEVEAIAYIEGAAKSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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