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Report for Sequence Feature Glyma17g08561

Feature Type:gene_model
Chromosome:Gm17
Start:6339157
stop:6342654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g08561
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05010AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300 SoyBaseE_val: 2.00E-110ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4536 KOG Predicted membrane protein JGI ISS
PTHR15876Panther TPRA-40 RELATED JGI ISS
PTHR15876:SF9Panther JGI ISS
PF10160PFAM Predicted membrane protein JGI ISS
UniRef100_I1MT59UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT59_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q94BV6UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g27210/T21B4_120 n=1 Tax=Arabidopsis thaliana RepID=Q94BV6_ARATH SoyBaseE_val: 5.00E-94ISS

Expression Patterns of Glyma17g08561
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08561 not represented in the dataset
Glyma17g08561 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08561
ParalogEvidenceComments
Glyma05g00490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08561 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g077800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g08561
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g08561
>Glyma17g08561.2   sequence type=transcript   gene model=Glyma17g08561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTATTTTAATTTTTATAAAATATGTTTGTTTTTGTGTTTTAGATAACATTTGTTTTGAAAGAATTAAAAAAAAAATTACGGACGAAAATGCATTTAAGCTTGATATTGTTACACGAAAACTTTCATCACAAGAGAACAAAGTCTAGCTCCGATTCGGTGACAGAACCTCCATCATCATCATCAACTGAATTCCACGATCTCGTTGAAGGAAAGAAAACTCTCACTTTGCCACCGACCAAACAATGTCCAATGGTTACGAATTTGCGATCTTTAGCCCCTGAAACCATGTCACTGAGTATGGAAGACCAAGCTCTGTCGCCAGCTGGCAGCGATCTGAAGTGCGATGGGTACGGCATCTTCCTTGTCATTTCGTCGCTTTTGTTTGTTTTGTATCTTACGGTGCACGCCAAGAAGAATCTCAACGGCGTCTGTCGTCGAGGCTCCTATGTTGTCGTTTCCTATTATGCCCTTCTCTGGCTCGTTACGCTTTTCAACCTCGCATGGTCTTTTCTTCAGCCATGGCAGTGCTCTCCTGCAAAGGAGGTTGCATGGAATCTCCTGTCATTATTTACAGCATCTGGTATGTTGTGTCTAGAGATAAGCTTGATGGCTTTCTTGCTGAAGGATAACTACATGAGTGGCATGGAAGCTCTAGCACACTCTTTCCATGCATCAGGAATTATTGTCTTTGTGGATACCCTTCTTAAGGCTATATATGTTTTTGGATTCGGGGTCCCATTGTTCAATCACAATGTTGGAAGTACACATACGATCCAGTGGAGTTTGTGGATAATACATAAATTATTGCTTGCTGCAGCATATGGTTTTATTTTATTTGCAAGTTTCTCCAAATGGAAAGAGAAGCTGCCTCCGAGGCCAACTTTCTACAACTATGTTGCTGTAATGTTTGTCTTCAGTGTGATTACCCTGTTTGCTTGTGGACTAGCAGCAATTGGCGCTGGACTCGGCAATTGGTTGTATGATCTCACTGTGCTTTGTTATCACTCTTTGTATCTTCCATTTCTTTACGTAACTTTTCTTGCAGATTTTTTCCAGGAGGAAGATTTCCTTTTGGACAACGCATATTACTCCGAGATGAAAGATGCCGGATTCTTTGATGCTGACTGGGAATAATTCCTCAAAAAATTATAAATGGAACCGACAGGCTTTTTTTGTCTGTGCACTGTAAACATTAGACTTTCTAACTAAATCAAGTTGAACTCTGCTCCGTCAACATCTCAATGATATGTTGGATTTGTATGACCCAACTTGCCTGTGAAATGCAGCTATAGGAATAGTGCTTTTGAAATTAATCATATTTCTATTAACCAAGAAAATAAGCTCCAAAATCCACACAGCATTAAGATATCTTTCTGAAGAATAGGTGGTGCCTCAAGTTGTCATCAGCAACTGCATTTTGCAATCCTAAACTCCATATTGAAAGTTCATAGTTTTGGAAAATCTTGTTCATCATCTCCATTTTCAAGACCCACATGATAGGCAACTAAACATACATTGGTCTCTGCATTTTGTATTTTGTAACATGCACCTACCAATGGACAACACTTTCGATGCCTGGCCTTGGATTTTTGAAGTGTTGGTTTGCATTGAATGGATCTGCAGGAGAATTCTTTTTTTTTTTTTTTTTTTACTTCTAATAAATGAATCTATCATAAAGAATGTAAACATACTTGCTCTGGTTTTGAGTTTCGTAGTCATTTTAAATTTGTTGCATTCCAGCACAAATAAGACTCTTTTAAGTCCTAACTCTTTCGTTTTTGAAACATTTTAAAATAGTATATATCATATCAATAAAAACA
Coding sequences of Glyma17g08561
>Glyma17g08561.1   sequence type=CDS   gene model=Glyma17g08561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTAAGCTTGATATTGTTACACGAAAACTTTCATCACAAGAGAACAAAGTCTAGCTCCGATTCGGTGACAGAACCTCCATCATCATCATCAACTGAATTCCACGATCTCGTTGAAGGAAAGAAAACTCTCACTTTGCCACCGACCAAACAATGTCCAATGGTTACGAATTTGCGATCTTTAGCCCCTGAAACCATGTCACTGAGTATGGAAGACCAAGCTCTGTCGCCAGCTGGCAGCGATCTGAAGTGCGATGGGTACGGCATCTTCCTTGTCATTTCGTCGCTTTTGTTTGTTTTGTATCTTACGGTGCACGCCAAGAAGAATCTCAACGGCGTCTGTCGTCGAGGCTCCTATGTTGTCGTTTCCTATTATGCCCTTCTCTGGCTCGTTACGCTTTTCAACCTCGCATGGTCTTTTCTTCAGCAGCCATGGCAGTGCTCTCCTGCAAAGGAGGTTGCATGGAATCTCCTGTCATTATTTACAGCATCTGGTATGTTGTGTCTAGAGATAAGCTTGATGGCTTTCTTGCTGAAGGATAACTACATGAGTGGCATGGAAGCTCTAGCACACTCTTTCCATGCATCAGGAATTATTGTCTTTGTGGATACCCTTCTTAAGGCTATATATGTTTTTGGATTCGGGGTCCCATTGTTCAATCACAATGTTGGAAGTACACATACGATCCAGTGGAGTTTGTGGATAATACATAAATTATTGCTTGCTGCAGCATATGGTTTTATTTTATTTGCAAGTTTCTCCAAATGGAAAGAGAAGCTGCCTCCGAGGCCAACTTTCTACAACTATGTTGCTGTAATGTTTGTCTTCAGTGTGATTACCCTGTTTGCTTGTGGACTAGCAGCAATTGGCGCTGGACTCGGCAATTGGTTGTATGATCTCACTGTGCTTTGTTATCACTCTTTGTATCTTCCATTTCTTTACGTAACTTTTCTTGCAGATTTTTTCCAGGAGGAAGATTTCCTTTTGGACAACGCATATTACTCCGAGATGAAAGATGCCGGATTCTTTGATGCTGACTGGGAATAA

>Glyma17g08561.2   sequence type=CDS   gene model=Glyma17g08561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTAAGCTTGATATTGTTACACGAAAACTTTCATCACAAGAGAACAAAGTCTAGCTCCGATTCGGTGACAGAACCTCCATCATCATCATCAACTGAATTCCACGATCTCGTTGAAGGAAAGAAAACTCTCACTTTGCCACCGACCAAACAATGTCCAATGGTTACGAATTTGCGATCTTTAGCCCCTGAAACCATGTCACTGAGTATGGAAGACCAAGCTCTGTCGCCAGCTGGCAGCGATCTGAAGTGCGATGGGTACGGCATCTTCCTTGTCATTTCGTCGCTTTTGTTTGTTTTGTATCTTACGGTGCACGCCAAGAAGAATCTCAACGGCGTCTGTCGTCGAGGCTCCTATGTTGTCGTTTCCTATTATGCCCTTCTCTGGCTCGTTACGCTTTTCAACCTCGCATGGTCTTTTCTTCAGCCATGGCAGTGCTCTCCTGCAAAGGAGGTTGCATGGAATCTCCTGTCATTATTTACAGCATCTGGTATGTTGTGTCTAGAGATAAGCTTGATGGCTTTCTTGCTGAAGGATAACTACATGAGTGGCATGGAAGCTCTAGCACACTCTTTCCATGCATCAGGAATTATTGTCTTTGTGGATACCCTTCTTAAGGCTATATATGTTTTTGGATTCGGGGTCCCATTGTTCAATCACAATGTTGGAAGTACACATACGATCCAGTGGAGTTTGTGGATAATACATAAATTATTGCTTGCTGCAGCATATGGTTTTATTTTATTTGCAAGTTTCTCCAAATGGAAAGAGAAGCTGCCTCCGAGGCCAACTTTCTACAACTATGTTGCTGTAATGTTTGTCTTCAGTGTGATTACCCTGTTTGCTTGTGGACTAGCAGCAATTGGCGCTGGACTCGGCAATTGGTTGTATGATCTCACTGTGCTTTGTTATCACTCTTTGTATCTTCCATTTCTTTACGTAACTTTTCTTGCAGATTTTTTCCAGGAGGAAGATTTCCTTTTGGACAACGCATATTACTCCGAGATGAAAGATGCCGGATTCTTTGATGCTGACTGGGAATAA
Predicted protein sequences of Glyma17g08561
>Glyma17g08561.1   sequence type=predicted peptide   gene model=Glyma17g08561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLSLILLHENFHHKRTKSSSDSVTEPPSSSSTEFHDLVEGKKTLTLPPTKQCPMVTNLRSLAPETMSLSMEDQALSPAGSDLKCDGYGIFLVISSLLFVLYLTVHAKKNLNGVCRRGSYVVVSYYALLWLVTLFNLAWSFLQQPWQCSPAKEVAWNLLSLFTASGMLCLEISLMAFLLKDNYMSGMEALAHSFHASGIIVFVDTLLKAIYVFGFGVPLFNHNVGSTHTIQWSLWIIHKLLLAAAYGFILFASFSKWKEKLPPRPTFYNYVAVMFVFSVITLFACGLAAIGAGLGNWLYDLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDADWE*

>Glyma17g08561.2   sequence type=predicted peptide   gene model=Glyma17g08561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLSLILLHENFHHKRTKSSSDSVTEPPSSSSTEFHDLVEGKKTLTLPPTKQCPMVTNLRSLAPETMSLSMEDQALSPAGSDLKCDGYGIFLVISSLLFVLYLTVHAKKNLNGVCRRGSYVVVSYYALLWLVTLFNLAWSFLQPWQCSPAKEVAWNLLSLFTASGMLCLEISLMAFLLKDNYMSGMEALAHSFHASGIIVFVDTLLKAIYVFGFGVPLFNHNVGSTHTIQWSLWIIHKLLLAAAYGFILFASFSKWKEKLPPRPTFYNYVAVMFVFSVITLFACGLAAIGAGLGNWLYDLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDADWE*






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