Report for Sequence Feature Glyma17g08550
Feature Type: gene_model
Chromosome: Gm17
Start: 6333956
stop: 6336817
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g08550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G07990 AT
Annotation by Michelle Graham. TAIR10: Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513
SoyBase E_val: 0 ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009718 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009813 GO-bp
Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010224 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV-B
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005506 GO-mf
Annotation by Michelle Graham. GO Molecular Function: iron ion binding
SoyBase N/A ISS
GO:0009055 GO-mf
Annotation by Michelle Graham. GO Molecular Function: electron carrier activity
SoyBase N/A ISS
GO:0016705 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
SoyBase N/A ISS
GO:0016711 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavonoid 3'-monooxygenase activity
SoyBase N/A ISS
GO:0019825 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxygen binding
SoyBase N/A ISS
GO:0020037 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heme binding
SoyBase N/A ISS
KOG0156
KOG
Cytochrome P450 CYP2 subfamily
JGI ISS
PTHR24298 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24298:SF44 Panther
JGI ISS
PF00067 PFAM
Cytochrome P450
JGI ISS
UniRef100_F2VR48 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Flavonoid 3'-monooxygenase n=1 Tax=Prunus avium RepID=F2VR48_PRUAV
SoyBase E_val: 0 ISS
UniRef100_I1MT58 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MT58_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g08550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g08550
Paralog Evidence Comments
Glyma05g00510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g08550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g077700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g08550
Coding sequences of Glyma17g08550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g08550.1 sequence type=CDS gene model=Glyma17g08550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCCCGTGACATCGTAGCAGCTATCCTTAGTTACCGGCTTTTGAAGCTCATAATAAGGAGGCCCTCATTACATCTGCCACCAGGGCCAAGGCCATGGCCCGTTGTGGGAAACTTGCCCCACATAGGCCCTTTGCTACATCGGGCTCTTGCGGTCTTGGCCCGCACTTATGGCCCGCTCATGTATCTCCGCTTGGGCTTCGTTGACGTGGTGGTGGCAGCTTCCGCCTCCGTGGCGGAACAGTTCTTGAAGGTTCACGACGCCAATTTCTCTAGCCGGCCACTGAACTCCATGACCACATACATGACCTATAACCAAAAAGACCTTGCTTTTGCTCCCTACGGCCCACGGTGGCGGTTTCTCCGCAAAATAAGCTCAGTTCACATGTTCTCTGTTAAGGCCTTGGATGATTTTAGACAACTCCGACAGGAAGAAGTGGAAAGATTGACAAGTAATTTAGCAAGTTCAGGCTCTACAGCTGTGAATTTGGGGCAATTGGTGAATGTATGTACCACCAACACATTGGCAAGAGTAATGATAGGACGGCGTCTTTTCAACGATAGTCGTAGTAGTTGGGATGCAAAAGCAGACGAATTTAAATCTATGGTTGTGGAACTCATGGTGTTGAATAGAGTTTTTAATATTGGTGACTTCATTCCTATCTTGGATCGGTTGGACCTTCAAGGAGTGAAATCTAAGACAAAAAAATTACACAAGAGGTTTGATACATTTTTGACTAGCATTCTTGAGGAACACAAGATTTTTAAGAATGAAAAACATCAAGACTTATATTTGACTACATTGTTGTCACTTAAGGAAGCTCCTCAAGAAGGATATAAACTTGACGAATCAGAGATCAAAGCAATACTTTTGGACATGTTTACAGCGGGGACAGACACATCATCAAGCACAATTGAGTGGGCAATTGCTGAACTGATTAGGAATCCAAGAGTCATGGTTCGGGTCCAACAAGAAATGGATATTGTTGTAGGTCGGGATAGGCGTGTGACTGAATTGGACTTGCCCCAACTTCCTTACTTGCAAGCTGTTGTGAAGGAAACATTTCGTCTCCACCCACCAACCCCTCTTTCCCTCCCACGAGTTGCGACGGAGAGTTGCGAGATATTCGATTACCACATCCCCAAAGGTACAACTCTCTTGGTCAATATTTGGGCAATAGGGCGTGACCCTAACGAGTGGATTGACCCATTGGAGTTTAAGCCTGAAAGGTTCCTCCTTGGTGGTGAGAAGGCTGGTGTTGACGTTATGGGCACCAACTTTGAGGTTATACCCTTTGGTGCTGGTCGTAGAATATGTGTTGGTATGGGCCTAGGCCTAAAGGTGGTTCAATTGCTCACTGCCACCTTAGCCCACACATTTGTTTGGGAGTTGGAAAATGGACTTGATCCGAAAAATCTCAACATGGATGAAGCACATGGGTTTATCCTTCAAAGAGAAATGCCTCTTTTTGTTCATCCTTATCCTAGACTTTCACGACATGTGTATTCATCATCATCATCACCATCGTCATCTTCATGA
Predicted protein sequences of Glyma17g08550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g08550.1 sequence type=predicted peptide gene model=Glyma17g08550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
SRDIVAAILSYRLLKLIIRRPSLHLPPGPRPWPVVGNLPHIGPLLHRALAVLARTYGPLMYLRLGFVDVVVAASASVAEQFLKVHDANFSSRPLNSMTTYMTYNQKDLAFAPYGPRWRFLRKISSVHMFSVKALDDFRQLRQEEVERLTSNLASSGSTAVNLGQLVNVCTTNTLARVMIGRRLFNDSRSSWDAKADEFKSMVVELMVLNRVFNIGDFIPILDRLDLQGVKSKTKKLHKRFDTFLTSILEEHKIFKNEKHQDLYLTTLLSLKEAPQEGYKLDESEIKAILLDMFTAGTDTSSSTIEWAIAELIRNPRVMVRVQQEMDIVVGRDRRVTELDLPQLPYLQAVVKETFRLHPPTPLSLPRVATESCEIFDYHIPKGTTLLVNIWAIGRDPNEWIDPLEFKPERFLLGGEKAGVDVMGTNFEVIPFGAGRRICVGMGLGLKVVQLLTATLAHTFVWELENGLDPKNLNMDEAHGFILQREMPLFVHPYPRLSRHVYSSSSSPSSSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
