Glyma17g08480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g08480

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6276496
stop:	6279090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26610	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr1:9193735-9195102 FORWARD LENGTH=455	SoyBase	E_val: 3.00E-67	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11389	Panther	ZINC FINGER PROTEIN	JGI		ISS
PTHR11389:SF34	Panther	ZINC FINGER PROTEIN ZNF140-RELATED	JGI		ISS
UniRef100_I1MT51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT51_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93718	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PEThy; ZPT4-2 n=1 Tax=Petunia x hybrida RepID=P93718_PETHY	SoyBase	E_val: 2.00E-75	ISS

Expression Patterns of Glyma17g08480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08480

Paralog	Evidence	Comments
Glyma05g00600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g076900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08480

Limit To All Plant Sequences

>Glyma17g08480.3   sequence type=transcript   gene model=Glyma17g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCCTCTCCTTAGTCTTTATTACCACTCCCTCTTTTTTATCTTTGCTTCCATGCATGGATTTCTCCTCCAAATATAGTCAAGTGGAGAGAAGAGAGAGATTGAGAGAGAAAGAGAGAAAATCAACGCTCACTATAATTCTTTTTTTCTCCTCTCTTGCCTTCTTCATCACCATCGTTAGCAACAAAGCAGTCAGTGCAAAAAGGTAGCGTGATGCAGCTTTTTCGCAGTTCCACCTCAATAATCTGATCTGGGTCTCGCTAGTTTTACTTTTCTTCTTTCTCTGATTCGCCTAACGAGATCGATGAATTCAGCATTCTTGGAAACTCTCTGATTCACCCTCCAAAGAACAACTCAACAACCCTTTTGTTTTGCTTCTGTTTCTTCTTCTCTGATCCTTATCGAAATTCAATGGAAGGAGATCACCATCGAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCCTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCACATCACCAACTTGTCGTCTGAGATGATGAATGAAAAAAAAGAAAAGCTTTCATCTTCTCTCAACAATGGTGGAGACAAAGATTCTGAAGCTGCTGCTGCAACTAACGCTGCTGCAAGCTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGAATCTCAGATTATTCAAGTGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCAGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATAGTGCTAAGATGGTTATGGATAGCCAATCTGATAATGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGTTGCTTCTTCTGCAGCAGCAGCAACAACTTCTTCTGTTGTGTCTTTTGCGAATCCTTCATCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCGTCATTCTGTGGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGGTCACCAAATTTGATTGCAGCAACAAGAACTTCCCTCCTAAAACAGCAAAAGTGACCAAGCAAAGTGACAACAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGGGGGACGAGTTCACAACTTTTGACTACTATTGCTGCTAGTGATAATATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAGTAGAGTTTCCAATAAAGGGTATGAAAGAGCCAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGGTGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGTTACTACTACTGGCAATAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAAATGAAGTCAAATAAGAACTTGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAACGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCCCTCTCCTGACCCAATAGCAACTGAAAACAAGCTCATGAAGAACAGTGATAGTGAGTATCTGGTGGAACATCAACATGGTGCTAGTCTACATAATGAGGGGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGACACCATGAGTGCCCAATTTGCTTCAAGGTTTTTCCTTCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAATTGTGCCTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTTCTACTGAGGAAGAAAGCTATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAGCCAAAGGTGACATGGTTTATTATTCCATTCCATCAGTGTTGCAACTTCAGAGTGAAGATTGAAACTGTATAGAAATGTTTCTGCATTCATTCCATTCATTCTTTACAGGATATGTGTCTTCTTCTTCTTCTTCAGAGTATTTCTGTTTTTGTTCAGACTTTTCAACTAGTTCATAATATACTGTTCAGTGTTCTCTTC

Coding sequences of Glyma17g08480

Limit To All Plant Sequences

>Glyma17g08480.2   sequence type=CDS   gene model=Glyma17g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGATCACCATCGAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCCTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCACATCACCAACTTGTCGTCTGAGATGATGAATGAAAAAAAAGAAAAGCTTTCATCTTCTCTCAACAATGGTGGAGACAAAGATTCTGAAGCTGCTGCTGCAACTAACGCTGCTGCAAGCTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGAATCTCAGATTATTCAAGTGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCAGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATAGTGCTAAGATGGTTATGGATAGCCAATCTGATAATGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGTTGCTTCTTCTGCAGCAGCAGCAACAACTTCTTCTGTTGTGTCTTTTGCGAATCCTTCATCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCGTCATTCTGTGGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGGTCACCAAATTTGATTGCAGCAACAAGAACTTCCCTCCTAAAACAGCAAAAGTGACCAAGCAAAGTGACAACAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGGGGGACGAGTTCACAACTTTTGACTACTATTGCTGCTAGTGATAATATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAGTAGAGTTTCCAATAAAGGGTATGAAAGAGCCAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGGTGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGTTACTACTACTGGCAATAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAAATGAAGTCAAATAAGAACTTGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAACGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCCCTCTCCTGACCCAATAGCAACTGAAAACAAGCTCATGAAGAACAGTGATAGTGAGTATCTGGTGGAACATCAACATGGTGCTAGTCTACATAATGAGGGGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGACACCATGAGTGCCCAATTTGCTTCAAGGTTTTTCCTTCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAATTGTGCCTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTTCTACTGAGGAAGAAAGCTATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAG

>Glyma17g08480.3   sequence type=CDS   gene model=Glyma17g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGATCACCATCGAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCCTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCACATCACCAACTTGTCGTCTGAGATGATGAATGAAAAAAAAGAAAAGCTTTCATCTTCTCTCAACAATGGTGGAGACAAAGATTCTGAAGCTGCTGCTGCAACTAACGCTGCTGCAAGCTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGAATCTCAGATTATTCAAGTGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCAGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATAGTGCTAAGATGGTTATGGATAGCCAATCTGATAATGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGTTGCTTCTTCTGCAGCAGCAGCAACAACTTCTTCTGTTGTGTCTTTTGCGAATCCTTCATCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCGTCATTCTGTGGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGGTCACCAAATTTGATTGCAGCAACAAGAACTTCCCTCCTAAAACAGCAAAAGTGACCAAGCAAAGTGACAACAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGGGGGACGAGTTCACAACTTTTGACTACTATTGCTGCTAGTGATAATATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAGTAGAGTTTCCAATAAAGGGTATGAAAGAGCCAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGGTGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGTTACTACTACTGGCAATAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAAATGAAGTCAAATAAGAACTTGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAACGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCCCTCTCCTGACCCAATAGCAACTGAAAACAAGCTCATGAAGAACAGTGATAGTGAGTATCTGGTGGAACATCAACATGGTGCTAGTCTACATAATGAGGGGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGACACCATGAGTGCCCAATTTGCTTCAAGGTTTTTCCTTCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAATTGTGCCTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTTCTACTGAGGAAGAAAGCTATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAG

Predicted protein sequences of Glyma17g08480

Limit To All Plant Sequences

>Glyma17g08480.2   sequence type=predicted peptide   gene model=Glyma17g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDHHRIQELKHACKFCGKCFPCGRSLGGHMRSHITNLSSEMMNEKKEKLSSSLNNGGDKDSEAAAATNAAASYGLRENPKKTWRISDYSSEDPLVFDKFCKECGKGFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNSAKMVMDSQSDNEATAPNKRRRSKRRTRYTVVASSAAAATTSSVVSFANPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGRHSVAESSDNNSAYFEARSSVRTNLVTKFDCSNKNFPPKTAKVTKQSDNKWEVGNSENPNSIRGTSSQLLTTIAASDNITTEIPENGFRVNKSRVSNKGYERAKSELEYVSALEDSEGEHGRSRVNGTESVLSKSVTTTGNKYSSIKTKFSGSEMKSNKNLVDKASEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASTNESSENSIETDPSPDPIATENKLMKNSDSEYLVEHQHGASLHNEGETVNESKKSKGHHECPICFKVFPSGQALGGHKRSHMVGGSESRNFQTIVPQEPVAEIRDFLDLNLPASTEEESYSHADSNSNRPWWIVEDNHKQEALVGLIS*

>Glyma17g08480.3   sequence type=predicted peptide   gene model=Glyma17g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDHHRIQELKHACKFCGKCFPCGRSLGGHMRSHITNLSSEMMNEKKEKLSSSLNNGGDKDSEAAAATNAAASYGLRENPKKTWRISDYSSEDPLVFDKFCKECGKGFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNSAKMVMDSQSDNEATAPNKRRRSKRRTRYTVVASSAAAATTSSVVSFANPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGRHSVAESSDNNSAYFEARSSVRTNLVTKFDCSNKNFPPKTAKVTKQSDNKWEVGNSENPNSIRGTSSQLLTTIAASDNITTEIPENGFRVNKSRVSNKGYERAKSELEYVSALEDSEGEHGRSRVNGTESVLSKSVTTTGNKYSSIKTKFSGSEMKSNKNLVDKASEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASTNESSENSIETDPSPDPIATENKLMKNSDSEYLVEHQHGASLHNEGETVNESKKSKGHHECPICFKVFPSGQALGGHKRSHMVGGSESRNFQTIVPQEPVAEIRDFLDLNLPASTEEESYSHADSNSNRPWWIVEDNHKQEALVGLIS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain