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Report for Sequence Feature Glyma17g08270

Feature Type:gene_model
Chromosome:Gm17
Start:6136697
stop:6138551
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g08270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30960AT Annotation by Michelle Graham. TAIR10: SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010118GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal movement SoyBaseN/AISS
GO:0010540GO-bp Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0583 KOG Serine/threonine protein kinase JGI ISS
PTHR24345Panther SERINE/THREONINE-PROTEIN KINASE PLK JGI ISS
PTHR24345:SF45Panther SERINE/THREONINE-PROTEIN KINASE PLK1 JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF03822PFAM NAF domain JGI ISS
UniRef100_B0I554UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Phaseolus vulgaris RepID=B0I554_PHAVU SoyBaseE_val: 0ISS
UniRef100_UPI000233EF16UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF16 related cluster n=1 Tax=unknown RepID=UPI000233EF16 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g08270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08270
ParalogEvidenceComments
Glyma02g36410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g074800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g08270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g08270
>Glyma17g08270.1   sequence type=CDS   gene model=Glyma17g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAGCGAGAGACAGTCGACGACGACGACGTTGCTGCACGGCAAGTACGAGCTAGGTCGTGTGCTGGGGCACGGAAGCTTCGCCAAGGTCTACCACGCGCGGAACCTGAAGACGGGGCAGCACGTGGCTATGAAGGTCGTTGGAAAAGAAAAGGTGATCAAGGTCGGAATGATGGAGCAGGTCAAGAGGGAGATCTCGGTCATGAAGATGGTCAAGCACCCAAACATCGTCGAGCTCCACGAAGTCATGGCCAGTAAGTCCAAGATCTACATCTCCATCGAACTCGTCCGCGGCGGAGAGCTCTTCAACAAGGTCTCCAAGGGACGCTTGAAGGAGGACCTGGCCAGACTCTACTTCCAGCAGTTAATCTCTGCCGTCGATTTCTGCCACAGCCGCGGCGTCTACCACCGTGACCTCAAGCCGGAGAATCTCCTCCTGGACGAACACGGCAACCTCAAGGTCTCCGACTTCGGACTCACCGCCTTCTCCGACCACCTTAAAGAGGACGGGCTGTTACACACCACGTGCGGCACGCCTGCGTACGTGTCACCGGAAGTTATTGCAAAGAAAGGCTATGACGGTGCCAAGGCTGATATATGGTCATGCGGAGTAATCCTCTACGTTCTCCTAGCTGGGTTTTTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAAAAAATCCATAGAGGGGACTTCAAGTGCCCACCGTGGTTCTCTCTCGATGCGAGAAAGCTTGTTACGAAACTGCTTGATCCGAATCCGAATACGAGGATTAGTATTTCTAAAGTGATGGAGTCTTCTTGGTTTAAGAAACAGGTGCCGAGGAAGGTGGAGGAGGTGGTTGAGAAGGTCGATTTGGAGGAGAAGATTGAGAATCAGGAGACGATGAATGCTTTCCACATAATCTCCTTGTCGGAGGGGTTCAATTTGTCGCCGTTGTTCGAGGAGAAGAGGAAGGAGGAGATGAGGTTCGCCACCGCGGGGACGCCGAGCAGCGTCATTTCGCGCCTGGAGGAGGTGGCCAAGGCGGGGAAGTTTGACGTGAAGAGTAGCGAGACGAAAGTGAGGCTTCAGGGACAGGAGCGTGGGAGGAAGGGGAAGCTAGCGATTGCGGCGGATATCTACGCCGTGACGCCGTCGTTTATGGTGGTGGAGGTCAAGAAGGACAATGGGGATACGTTGGAGTATAACCAGTTCTGCAGCAAACAACTTCGTCCTGCGCTTAAGGATATCTTCTGGAATTCTGCACCTGCCAGTGCTTGA
Predicted protein sequences of Glyma17g08270
>Glyma17g08270.1   sequence type=predicted peptide   gene model=Glyma17g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSERQSTTTTLLHGKYELGRVLGHGSFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHPNIVELHEVMASKSKIYISIELVRGGELFNKVSKGRLKEDLARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLTAFSDHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIHRGDFKCPPWFSLDARKLVTKLLDPNPNTRISISKVMESSWFKKQVPRKVEEVVEKVDLEEKIENQETMNAFHIISLSEGFNLSPLFEEKRKEEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSAPASA*






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