Glyma17g08250 - SoyBase

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Report for Sequence Feature Glyma17g08250

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6114315
stop:	6118519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58000	AT	Annotation by Michelle Graham. TAIR10: Reticulon family protein \| chr5:23477416-23479496 FORWARD LENGTH=487	SoyBase	E_val: 5.00E-107	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
KOG1792	KOG	Reticulon	JGI		ISS
PTHR10994	Panther	RETICULON/NOGO	JGI		ISS
PTHR10994:SF43	Panther	UNKNOWN PROTEIN	JGI		ISS
PF02453	PFAM	Reticulon	JGI		ISS
UniRef100_I1MT31	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT31_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q56X72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B21 n=1 Tax=Arabidopsis thaliana RepID=RTNLS_ARATH	SoyBase	E_val: 2.00E-104	ISS

Expression Patterns of Glyma17g08250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08250

Paralog	Evidence	Comments
Glyma02g36433	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g074600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08250

Limit To All Plant Sequences

>Glyma17g08250.1   sequence type=CDS   gene model=Glyma17g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTGAGTAGGAGAAGACTTGGAGTTAGATGCAGTGTGGTTGCAGGGTCAGTGTGGGAGAGCAGAATGAAGAGTGATGAAGTTGGTGGTGGAGTTAAGGTCTTCACTGGAGAACAAAGTGCTGAAGAAGGAGGCAATGGTGGCACCTGCAGATTGAAGAGAAGCCAAATTGGGAGTGTGGTTGCCACTGGAAAGAGAAAAACTTGGAAATCAGAAGGGTTAGAAAACAACCATATTCAAATAGCCATAGGAAAATCAGAACCCCAGAAGAATGGTGGTAATAGTAGTAGTAGTCAGCAATGCAAGGATCTCAACATATCTTCTGATTCAATCAAGAAGAGCCCAATTCAGGCCAGGAAGAAAAGGTCTGGGGTGGGTGAATCTTTTGAAAAGAATGCTGGGAAGCTCAGAAAGAACAAATCAGATTTAATTAAGAATGTCGGTGATGGAGATGCGGGAAATGCAATTCAGCCTAGGAAGGGCAAATCAGAGTTGGATCATGTTTTGGATGAATCAAGGAATGATGGATTGGCTGGTGGGTCTGCAAGAGTTGTAATTCTCAATGGGAAGAATGATTGTGATGAAAATTGCAAGGATTTTGGTGTGTGCCTAGAGAAGGTCATTTCTAGCAATTCAGGTAATGTTGGCATGATCAAGTGTTCACCAGTGCATGTTGATGATGATGATGAAGATGATGTGGTAGAGGAAGAGGTGGATGATGAGGAGATTGATATTGAGATGGAGAAGGGGAGCTTTGATGTTAAGGAAATCAGTGTACCAGAATCCAAGGTTGTGAATGAGACAGAAAGGAAGGAGGTTGTGAATGTAGCAGCAAAACAGAAGATTGTGAATGAACCAGAACCTAAAAAGGTTGTGAGTACCAACAGACAATTTCATCAAAAAAATGAAAGGCCAGTGTCTGTTCCTATATCTGTGAAGCCATCTCTTCCAATTAGAAAGCTTTCCACAATTCACCAAAATTTCTCCAAGGCTGATTCAATTCCAAAGGCAGAAGAGTACTGTAGTTTTCCACAGAGCCAGAACAAACTGCAGAGTTTAGTTGATTTAATCATGTGGAGAGATATCTCTAGATCAGCATTTATCTTCGGGATTGGAACATTCGCCATAGTTTTATCTTCTTATGCAAAAGATATCAATCTGAGTCTTATTTCTGTAATGTCCTATATTGGCCTTGTCTATCTAGCTGTTATCTTCCTCTATAGATCACTAATATGCAGGGGGGTCATAGATGTAGAGGACACAAACTATGTACTACGAGAAGAAGAAGCAATTTGGGTGCTAAAATTGATCCTTCCTTACTTGAATGAGTTCCTGTCAAAACTTAGAGCCATGTTTTCTGGAGATCCTGGTACCACAATTAAGTTGGCAGTTTTGCTCTTTGTTCTTGCCAGATGTGGCAGCTACATAACCATTTGGAAGATGGCCAAATTCGGCTTCTTTGGAGTTTTTACCGTGCCAAAAATCTGCTCCTCGTATTCTGCACAGTTAACTGCATTCGCAAACTTTTGGATTCGTCGATTCCGGGATGCTTGGGATTCTTGCTCTCACAAAAAGGCTGTGGCTCTTGGCATTTTTGGCCTTGTTTGGAATTTGTCATCAGTGGTTGCTCGCATTTGGTCAGTGTTTGTGCTATTTGTGGCCTTCAGATATTATCAACAACATTATTTGGTGAGAGAGGAATTGGTGGAAAATGAAGCAGGATGTGATGAAACATGGCAAGAACCTGCTGGAGTTAAAGTTGGAATGCAGAGACAACAGTCCACACACAAAATCTTTGAAACTCAGAAAGTAAAGAAAGTATTCTAA

Predicted protein sequences of Glyma17g08250

Limit To All Plant Sequences

>Glyma17g08250.1   sequence type=predicted peptide   gene model=Glyma17g08250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVSRRRLGVRCSVVAGSVWESRMKSDEVGGGVKVFTGEQSAEEGGNGGTCRLKRSQIGSVVATGKRKTWKSEGLENNHIQIAIGKSEPQKNGGNSSSSQQCKDLNISSDSIKKSPIQARKKRSGVGESFEKNAGKLRKNKSDLIKNVGDGDAGNAIQPRKGKSELDHVLDESRNDGLAGGSARVVILNGKNDCDENCKDFGVCLEKVISSNSGNVGMIKCSPVHVDDDDEDDVVEEEVDDEEIDIEMEKGSFDVKEISVPESKVVNETERKEVVNVAAKQKIVNEPEPKKVVSTNRQFHQKNERPVSVPISVKPSLPIRKLSTIHQNFSKADSIPKAEEYCSFPQSQNKLQSLVDLIMWRDISRSAFIFGIGTFAIVLSSYAKDINLSLISVMSYIGLVYLAVIFLYRSLICRGVIDVEDTNYVLREEEAIWVLKLILPYLNEFLSKLRAMFSGDPGTTIKLAVLLFVLARCGSYITIWKMAKFGFFGVFTVPKICSSYSAQLTAFANFWIRRFRDAWDSCSHKKAVALGIFGLVWNLSSVVARIWSVFVLFVAFRYYQQHYLVREELVENEAGCDETWQEPAGVKVGMQRQQSTHKIFETQKVKKVF*

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