Glyma17g08170 - SoyBase

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Report for Sequence Feature Glyma17g08170

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6042312
stop:	6050551
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30935	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 32 \| chr4:15051916-15053908 REVERSE LENGTH=466	SoyBase	E_val: 1.00E-135	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7JGQ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=2 Tax=Medicago truncatula RepID=G7JGQ2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT25	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT25_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g08170

Locus	Gene Symbol	Protein Name
	WRKY24	WRKY Transcription Factor

Expression Patterns of Glyma17g08170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08170

Paralog	Evidence	Comments
Glyma02g36510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g074000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g08170

Limit To All Plant Sequences

>Glyma17g08170.1   sequence type=CDS   gene model=Glyma17g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAGCGCCGCAGCCCCCAACCTCTCCCAGAGCCAGACACCAAAGGAAACGATTCCCACCAAAAACCGCAACACAACAAGGAAACAGACCGAGTCGCCGAATCGCCTTCCGCCGCCGAGTCGCAGCGTGGCGAGTTACGGAGCTCCGACGAGCCTCGTACGGAGTCCAATTTAGAAACCCTAGGCCGTGGTGTTTCCTCATCGGTTGAAACCCTTGCTGCGCAGTCTCCGACTGACGATTTGCAAGGGAGCTCTACCGCGCTTAATTCGGGTGCCAAAGCCGAAAGTAAGGAGACCGTTGGATCTCCTGAAAAGGAAATTATTGATAGAGGAGCAGTGCAGCCACTCCAAACTCAGACAGAAGATCGGCTTCAGGTGTCTGCGTGTTCAACTCCATTGTCTGATCTATCACCAACTTCTGTTACACAATCTTTATCAATTGTTTCTAGTCCAACCATACCGAAACAGAAAATATCTACTCCAAAGGTCAATAACGCACATGTGCCAGAAGTAGATAAGAAAAATCCTTCTGGTCGCAAAACCTTATCTTCTGTTTCTATTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGATTGTTGTGCTAAGAAGATTGAATGCTGTGATGATTCAGGTCATGTGATAGAGATTGTATATAAAAGTGAGCACAGTCATGATCCTCCACGGAAGACTAATTCCATTAGGGAAAATAAGTTTCTGTCTTCCAGTGAACCCATTGTAGAAAACAGTGTTCCGGAGCAGCCTATCAAAGTTCTGAAGGATGCTGATCCATCCATTTCTTCAAAAGAATCTCTACAAGAAGCACCCTGCAGCACTGATAAGAAACGACAAAACACATCTAATATCAGTGGTAATGGTAAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGTACCAAAAAAAAGAATGAAGAAAGGTGACTTAACAGACATGGATTCTCCAGTAAAACCTGGAAAAAAATCCAAGTTTGTTGTACATGCAGCCGGAGATGTGGGGATATCTGCTGATGGTTACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAAGGAAATCCACATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCGGTCAGAAAGCACATTGAGACCGCTGTAGATAATTCAGATGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCAGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCTCCTTGAACAGTTTGCAGGTGAAGAAATCCGATTCCCCACAAAACAAGAAAATTTCTACTCAATGGTCAGTGGACACCGAAGGAGAACTAACTGGGGAAGCACTGGAGCTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA

Predicted protein sequences of Glyma17g08170

Limit To All Plant Sequences

>Glyma17g08170.1   sequence type=predicted peptide   gene model=Glyma17g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRRSPQPLPEPDTKGNDSHQKPQHNKETDRVAESPSAAESQRGELRSSDEPRTESNLETLGRGVSSSVETLAAQSPTDDLQGSSTALNSGAKAESKETVGSPEKEIIDRGAVQPLQTQTEDRLQVSACSTPLSDLSPTSVTQSLSIVSSPTIPKQKISTPKVNNAHVPEVDKKNPSGRKTLSSVSIARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDDSGHVIEIVYKSEHSHDPPRKTNSIRENKFLSSSEPIVENSVPEQPIKVLKDADPSISSKESLQEAPCSTDKKRQNTSNISGNGKVILKEEHVNEPVPKKRMKKGDLTDMDSPVKPGKKSKFVVHAAGDVGISADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASLNSLQVKKSDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC*

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