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Report for Sequence Feature Glyma17g08170

Feature Type:gene_model
Chromosome:Gm17
Start:6042312
stop:6050551
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30935AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 32 | chr4:15051916-15053908 REVERSE LENGTH=466 SoyBaseE_val: 1.00E-135ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G7JGQ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=2 Tax=Medicago truncatula RepID=G7JGQ2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MT25UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT25_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY24 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g36510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g074000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g08170.1   sequence type=CDS   gene model=Glyma17g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAGCGCCGCAGCCCCCAACCTCTCCCAGAGCCAGACACCAAAGGAAACGATTCCCACCAAAAACCGCAACACAACAAGGAAACAGACCGAGTCGCCGAATCGCCTTCCGCCGCCGAGTCGCAGCGTGGCGAGTTACGGAGCTCCGACGAGCCTCGTACGGAGTCCAATTTAGAAACCCTAGGCCGTGGTGTTTCCTCATCGGTTGAAACCCTTGCTGCGCAGTCTCCGACTGACGATTTGCAAGGGAGCTCTACCGCGCTTAATTCGGGTGCCAAAGCCGAAAGTAAGGAGACCGTTGGATCTCCTGAAAAGGAAATTATTGATAGAGGAGCAGTGCAGCCACTCCAAACTCAGACAGAAGATCGGCTTCAGGTGTCTGCGTGTTCAACTCCATTGTCTGATCTATCACCAACTTCTGTTACACAATCTTTATCAATTGTTTCTAGTCCAACCATACCGAAACAGAAAATATCTACTCCAAAGGTCAATAACGCACATGTGCCAGAAGTAGATAAGAAAAATCCTTCTGGTCGCAAAACCTTATCTTCTGTTTCTATTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGATTGTTGTGCTAAGAAGATTGAATGCTGTGATGATTCAGGTCATGTGATAGAGATTGTATATAAAAGTGAGCACAGTCATGATCCTCCACGGAAGACTAATTCCATTAGGGAAAATAAGTTTCTGTCTTCCAGTGAACCCATTGTAGAAAACAGTGTTCCGGAGCAGCCTATCAAAGTTCTGAAGGATGCTGATCCATCCATTTCTTCAAAAGAATCTCTACAAGAAGCACCCTGCAGCACTGATAAGAAACGACAAAACACATCTAATATCAGTGGTAATGGTAAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGTACCAAAAAAAAGAATGAAGAAAGGTGACTTAACAGACATGGATTCTCCAGTAAAACCTGGAAAAAAATCCAAGTTTGTTGTACATGCAGCCGGAGATGTGGGGATATCTGCTGATGGTTACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAAGGAAATCCACATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCGGTCAGAAAGCACATTGAGACCGCTGTAGATAATTCAGATGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCAGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCTCCTTGAACAGTTTGCAGGTGAAGAAATCCGATTCCCCACAAAACAAGAAAATTTCTACTCAATGGTCAGTGGACACCGAAGGAGAACTAACTGGGGAAGCACTGGAGCTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA

>Glyma17g08170.1   sequence type=predicted peptide   gene model=Glyma17g08170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRRSPQPLPEPDTKGNDSHQKPQHNKETDRVAESPSAAESQRGELRSSDEPRTESNLETLGRGVSSSVETLAAQSPTDDLQGSSTALNSGAKAESKETVGSPEKEIIDRGAVQPLQTQTEDRLQVSACSTPLSDLSPTSVTQSLSIVSSPTIPKQKISTPKVNNAHVPEVDKKNPSGRKTLSSVSIARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDDSGHVIEIVYKSEHSHDPPRKTNSIRENKFLSSSEPIVENSVPEQPIKVLKDADPSISSKESLQEAPCSTDKKRQNTSNISGNGKVILKEEHVNEPVPKKRMKKGDLTDMDSPVKPGKKSKFVVHAAGDVGISADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASLNSLQVKKSDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC*







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