Glyma17g08160 - SoyBase

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Report for Sequence Feature Glyma17g08160

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6034711
stop:	6039091
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57970	AT	Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein \| chr5:23467316-23468910 FORWARD LENGTH=347	SoyBase	E_val: 2.00E-157	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity	SoyBase	N/A	ISS
PF03352	PFAM	Methyladenine glycosylase	JGI		ISS
UniRef100_G7JGQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyladenine glycosylase protein-like protein n=1 Tax=Medicago truncatula RepID=G7JGQ1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT24_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g08160 not represented in the dataset	Glyma17g08160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08160

Paralog	Evidence	Comments
Glyma02g36520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g073900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08160

Limit To All Plant Sequences

>Glyma17g08160.2   sequence type=transcript   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATTCAATAAATAAATCTATTTGAAAGAATAAAATATAAAATATAGTACCATATTTTTTTAATTCTTACCAAACTTGACTTTAAATAATTTCGTTTTCTAAAGGCTGATACTTGCGTCACTAGGCGTTCTTACTTCTTACTCTCCCCATTGTCTCACTTCATCTCATCTCCCACATTTTTTTTTTCTGTATCTTCGTTTGTTTTGATCAAACTTCTCTTTCTCTCTCTTCAATCTTCAACGTTTCTGTTATTCTCACTCCCAAACCTCACTCCTTTTCCCGGAAAATTTCTTTTTTTGCTATTTTTCTGGGAAAGAAAAAGAAAAAGGAAACAAAATAAACGAAGCATGAATTCAGCTGAGGAATGCGTGTAAGCGAGGTTGCAGTGCTGAGAGCAACCTCCTTCTCCACAATGCAGAATGCAATCTCAACGTTTGGAGACTCTTTCAACCTCATTTCCAAACCCACCACTCCTACAGTGCAACTAGGCTTAAACCCTAGCTTTTGCTCAAAAGGGTCAACAACTTGATCCTGTTGTGTCAGCAGCACCCACCGCCAGCTTCAACCTTTCTGGGTTTTGAGCTGATTTCGGAATCTGGGTATCAGAGGAATGCGGGTTTGGTCTCTCAATGCCTCTCAAATTGCAAGCTTTGGATGTGTTTTCAGAGATACCGAGTTAGTGCATATTTGAGATCTATTTAGAAACCCACATCACTGCACACCAGGTGTTCGCCAAAAGTTTCAGTGATCAAGCTTTCTATTGAGTCTTAAGCTTCCAAGAGTGGTGTTTCTGTGAGTTTTTCTGGGTAGCTGATGGATAGTTAGAAGGAAAAAAAAAAAAAAAAGAAGACAGATTCTCCTGAAGTGGTGAGTGGTGAAGTAACAAACAAAAAAGGAAATTGAACCAAAAAAATAGTGTCAATGTCAGGTCCTAGATTGAGGTCTATGAATGTTGGTGACTCAGAGGCTGCAAGGCCTGTGTTTGGACCAGCTGGGAACAAGACAGGGTCATTGAGTTCTCGGAAAACAGCTTCAAAGCCACTGAGGAAAGCTGAGAAATTGTACAACGAGGCCAAAGAGAAGAAGAAGTCCTATGAAATGTCTTCGGTTGTGGCTTCTCCTCAGTCACATTCTGCTAGTGTTCTGCGCCGGCATGAGCAGTTGCTGCATTGTAACTTGTCTCTCAATGCGTCGTGCTCGTCTGATGCATCCACTGACTCGTTTCATAGCCGGGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTTGGGTTGTACAAGGAAGCGCTCCGTGTCAAAGCCTAGGAGTGTTGCTTCTGATGGAGTGTTGGAATCTCCTCCTCACGGTTCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAACCATGTTATGCTACCTTCCATGACGAAGAATGGGGAGTTCCAGTACACGATGACAAGAAACTATTTGAGCTTCTTGTTCTTTCAAGTGCACTGTCTGAACTCTCTTGGCCAGCTATTCTAAGCAAGAGGCACATTTTTAGGGAAGTTTTTGTTGACTTTGATCCAGTTGCTGTCTCAAAATTTAATGAGAAGAAGATAATGGCACCGGGATCCACTGCAAGCTCCTTACTTTCTGACCTTAAATTGCGTGCTATAATTGAGAATGCACGTCAAATATCAAAGGTTTTACTGATGCCAGGTCATAGAAGAGTTTGGGTCATTTGACAAGTATATTTGGAGTTTTGTGAACCATAAGCCTATAATTAGCAGATTCCGATATCCTCGACAGGTTCCTGTAAAAACACCAAAAGCTGATGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGAGGTGTGGGTCCCACTGTCATATACTCCTTCATGCAGGTTGTGGGGTTAACAAATGACCACCTCATCAGTTGCTTCAGATTCCAAGATTGTATGGCTGCTGCAGAAGGGAAGGAAGAGAATGCCATCAAGGATGATGCTCAACAAAAGGAGCGTGATCATGTGATGGAATCTGATCTGTCCATTGCCATCGACAATTTGAGTTTATCCTCAGAGTGAATGACCGACGACTCAACAATTGTCTTGGCTGATATAGATCCTGGTTCTATTGGCAGTTCATCTGGTAGACCAAATTCATACTACTTAGGCCTTAGATTGAAGAGTCATGATGGAGGAGAACTTATGTACCCATCTCATGAAATCCCTGAAACTGAAAGCATAATTAGTTTAGTTGAATTAAATCAACTGAGTACCTAACTACCCATGCTGTTGTATGTGGCTTCTTGAGGGAGGCCTTAACAAATTGTTGTACAATTTTTTGTACAGTAAAAAATATCGGACGATTAGAAATATCTTTTATTAAGCCAGTGGCATCAGGTGATAGATAACCTTGCTCTTTGTTACCATCTCAATTTTTTTATGGGTAAATGTTAATTATTGGCAAATATTAATTATTAGGATTGTTAG

>Glyma17g08160.3   sequence type=transcript   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATTCAATAAATAAATCTATTTGAAAGAATAAAATATAAAATATAGTACCATATTTTTTTAATTCTTACCAAACTTGACTTTAAATAATTTCGTTTTCTAAAGGCTGATACTTGCGTCACTAGGCGTTCTTACTTCTTACTCTCCCCATTGTCTCACTTCATCTCATCTCCCACATTTTTTTTTTCTGTATCTTCGTTTGTTTTGATCAAACTTCTCTTTCTCTCTCTTCAATCTTCAACGTTTCTGTTATTCTCACTCCCAAACCTCACTCCTTTTCCCGGAAAATTTCTTTTTTTGCTATTTTTCTGGGAAAGAAAAAGAAAAAGGAAACAAAATAAACGAAGCATGAATTCAGCTGAGGAATGCGTGTAAGCGAGGTTGCAGTGCTGAGAGCAACCTCCTTCTCCACAATGCAGAATGCAATCTCAACGTTTGGAGACTCTTTCAACCTCATTTCCAAACCCACCACTCCTACAGTGCAACTAGGCTTAAACCCTAGCTTTTGCTCAAAAGGGTCAACAACTTGATCCTGTTGTGTCAGCAGCACCCACCGCCAGCTTCAACCTTTCTGGGTTTTGAGCTGATTTCGGAATCTGGGTATCAGAGGAATGCGGGTTTGGTCTCTCAATGCCTCTCAAATTGCAAGCTTTGGATGTGTTTTCAGAGATACCGAGTTAGTGCATATTTGAGATCTATTTAGAAACCCACATCACTGCACACCAGGTGTTCGCCAAAAGTTTCAGTGATCAAGCTTTCTATTGAGTCTTAAGCTTCCAAGAGTGGTGTTTCTGTGAGTTTTTCTGGGTAGCTGATGGATAGTTAGAAGGAAAAAAAAAAAAAAAAGAAGACAGATTCTCCTGAAGTGGTGAGTGGTGAAGTAACAAACAAAAAAGGAAATTGAACCAAAAAAATAGTGTCAATGTCAGGTCCTAGATTGAGGTCTATGAATGTTGGTGACTCAGAGGCTGCAAGGCCTGTGTTTGGACCAGCTGGGAACAAGACAGGGTCATTGAGTTCTCGGAAAACAGCTTCAAAGCCACTGAGGAAAGCTGAGAAATTGTACAACGAGGCCAAAGAGAAGAAGAAGTCCTATGAAATGTCTTCGGTTGTGGCTTCTCCTCAGTCACATTCTGCTAGTGTTCTGCGCCGGCATGAGCAGTTGCTGCATTGTAACTTGTCTCTCAATGCGTCGTGCTCGTCTGATGCATCCACTGACTCGTTTCATAGCCGGGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTTGGGTTGTACAAGGAAGCGCTCCGTGTCAAAGCCTAGGAGTGTTGCTTCTGATGGAGTGTTGGAATCTCCTCCTCACGGTTCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAACCATGTTATGCTACCTTCCATGACGAAGAATGGGGAGTTCCAGTACACGATGACAAGAAACTATTTGAGCTTCTTGTTCTTTCAAGTGCACTGTCTGAACTCTCTTGGCCAGCTATTCTAAGCAAGAGGCACATTTTTAGTTCATTGCAGGGAAGTTTTTGTTGACTTTGATCCAGTTGCTGTCTCAAAATTTAATGAGAAGAAGATAATGGCACCGGGATCCACTGCAAGCTCCTTACTTTCTGACCTTAAATTGCGTGCTATAATTGAGAATGCACGTCAAATATCAAAGGTCATAGAAGAGTTTGGGTCATTTGACAAGTATATTTGGAGTTTTGTGAACCATAAGCCTATAATTAGCAGATTCCGATATCCTCGACAGGTTCCTGTAAAAACACCAAAAGCTGATGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGAGGTGTGGGTCCCACTGTCATATACTCCTTCATGCAGGTTGTGGGGTTAACAAATGACCACCTCATCAGTTGCTTCAGATTCCAAGATTGTATGGCTGCTGCAGAAGGGAAGGAAGAGAATGCCATCAAGGATGATGCTCAACAAAAGGAGCGTGATCATGTGATGGAATCTGATCTGTCCATTGCCATCGACAATTTGAGTTTATCCTCAGAGTGAATGACCGACGACTCAACAATTGTCTTGGCTGATATAGATCCTGGTTCTATTGGCAGTTCATCTGGTAGACCAAATTCATACTACTTAGGCCTTAGATTGAAGAGTCATGATGGAGGAGAACTTATGTACCCATCTCATGAAATCCCTGAAACTGAAAGCATAATTAGTTTAGTTGAATTAAATCAACTGAGTACCTAACTACCCATGCTGTTGTATGTGGCTTCTTGAGGGAGGCCTTAACAAATTGTTGTACAATTTTTTGTACAGTAAAAAATATCGGACGATTAGAAATATCTTTTATTAAGCCAGTGGCATCAGGTGATAGATAACCTTGCTCTTTGTTACCATCTCAATTTTTTTATGGGTAAATGTTAATTATTGGCAAATATTAATTATTAGGATTGTTAG

Coding sequences of Glyma17g08160

Limit To All Plant Sequences

>Glyma17g08160.1   sequence type=CDS   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTCCTAGATTGAGGTCTATGAATGTTGGTGACTCAGAGGCTGCAAGGCCTGTGTTTGGACCAGCTGGGAACAAGACAGGGTCATTGAGTTCTCGGAAAACAGCTTCAAAGCCACTGAGGAAAGCTGAGAAATTGTACAACGAGGCCAAAGAGAAGAAGAAGTCCTATGAAATGTCTTCGGTTGTGGCTTCTCCTCAGTCACATTCTGCTAGTGTTCTGCGCCGGCATGAGCAGTTGCTGCATTGTAACTTGTCTCTCAATGCGTCGTGCTCGTCTGATGCATCCACTGACTCGTTTCATAGCCGGGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTTGGGTTGTACAAGGAAGCGCTCCGTGTCAAAGCCTAGGAGTGTTGCTTCTGATGGAGTGTTGGAATCTCCTCCTCACGGTTCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAACCATGTTATGCTACCTTCCATGACGAAGAATGGGGAGTTCCAGTACACGATGACAAGAAACTATTTGAGCTTCTTGTTCTTTCAAGTGCACTGTCTGAACTCTCTTGGCCAGCTATTCTAAGCAAGAGGCACATTTTTAGGGAAGTTTTTGTTGACTTTGATCCAGTTGCTGTCTCAAAATTTAATGAGAAGAAGATAATGGCACCGGGATCCACTGCAAGCTCCTTACTTTCTGACCTTAAATTGCGTGCTATAATTGAGAATGCACGTCAAATATCAAAGGTCATAGAAGAGTTTGGGTCATTTGACAAGTATATTTGGAGTTTTGTGAACCATAAGCCTATAATTAGCAGATTCCGATATCCTCGACAGGTTCCTGTAAAAACACCAAAAGCTGATGTTATTAGCAAAGACCTGGTGAGAAGAGGTTTCCGAGGTGTGGGTCCCACTGTCATATACTCCTTCATGCAGGTTGTGGGGTTAACAAATGACCACCTCATCAGTTGCTTCAGATTCCAAGATTGTATGGCTGCTGCAGAAGGGAAGGAAGAGAATGCCATCAAGGATGATGCTCAACAAAAGGAGCGTGATCATGTGATGGAATCTGATCTGTCCATTGCCATCGACAATTTGAGTTTATCCTCAGAGTGA

>Glyma17g08160.2   sequence type=CDS   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTCCTAGATTGAGGTCTATGAATGTTGGTGACTCAGAGGCTGCAAGGCCTGTGTTTGGACCAGCTGGGAACAAGACAGGGTCATTGAGTTCTCGGAAAACAGCTTCAAAGCCACTGAGGAAAGCTGAGAAATTGTACAACGAGGCCAAAGAGAAGAAGAAGTCCTATGAAATGTCTTCGGTTGTGGCTTCTCCTCAGTCACATTCTGCTAGTGTTCTGCGCCGGCATGAGCAGTTGCTGCATTGTAACTTGTCTCTCAATGCGTCGTGCTCGTCTGATGCATCCACTGACTCGTTTCATAGCCGGGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTTGGGTTGTACAAGGAAGCGCTCCGTGTCAAAGCCTAGGAGTGTTGCTTCTGATGGAGTGTTGGAATCTCCTCCTCACGGTTCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAACCATGTTATGCTACCTTCCATGACGAAGAATGGGGAGTTCCAGTACACGATGACAAGAAACTATTTGAGCTTCTTGTTCTTTCAAGTGCACTGTCTGAACTCTCTTGGCCAGCTATTCTAAGCAAGAGGCACATTTTTAGGGAAGTTTTTGTTGACTTTGATCCAGTTGCTGTCTCAAAATTTAATGAGAAGAAGATAATGGCACCGGGATCCACTGCAAGCTCCTTACTTTCTGACCTTAAATTGCGTGCTATAATTGAGAATGCACGTCAAATATCAAAGGTTTTACTGATGCCAGGTCATAGAAGAGTTTGGGTCATTTGA

>Glyma17g08160.3   sequence type=CDS   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTCCTAGATTGAGGTCTATGAATGTTGGTGACTCAGAGGCTGCAAGGCCTGTGTTTGGACCAGCTGGGAACAAGACAGGGTCATTGAGTTCTCGGAAAACAGCTTCAAAGCCACTGAGGAAAGCTGAGAAATTGTACAACGAGGCCAAAGAGAAGAAGAAGTCCTATGAAATGTCTTCGGTTGTGGCTTCTCCTCAGTCACATTCTGCTAGTGTTCTGCGCCGGCATGAGCAGTTGCTGCATTGTAACTTGTCTCTCAATGCGTCGTGCTCGTCTGATGCATCCACTGACTCGTTTCATAGCCGGGCTTCTACTGGAAGATTGACTCGGTCTAATAGCTTGGGTTGTACAAGGAAGCGCTCCGTGTCAAAGCCTAGGAGTGTTGCTTCTGATGGAGTGTTGGAATCTCCTCCTCACGGTTCACAATCCAAGAAGAGGTGTGCTTGGATCACTCCTAATACTGAACCATGTTATGCTACCTTCCATGACGAAGAATGGGGAGTTCCAGTACACGATGACAAGAAACTATTTGAGCTTCTTGTTCTTTCAAGTGCACTGTCTGAACTCTCTTGGCCAGCTATTCTAAGCAAGAGGCACATTTTTAGTTCATTGCAGGGAAGTTTTTGTTGA

Predicted protein sequences of Glyma17g08160

Limit To All Plant Sequences

>Glyma17g08160.1   sequence type=predicted peptide   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPRLRSMNVGDSEAARPVFGPAGNKTGSLSSRKTASKPLRKAEKLYNEAKEKKKSYEMSSVVASPQSHSASVLRRHEQLLHCNLSLNASCSSDASTDSFHSRASTGRLTRSNSLGCTRKRSVSKPRSVASDGVLESPPHGSQSKKRCAWITPNTEPCYATFHDEEWGVPVHDDKKLFELLVLSSALSELSWPAILSKRHIFREVFVDFDPVAVSKFNEKKIMAPGSTASSLLSDLKLRAIIENARQISKVIEEFGSFDKYIWSFVNHKPIISRFRYPRQVPVKTPKADVISKDLVRRGFRGVGPTVIYSFMQVVGLTNDHLISCFRFQDCMAAAEGKEENAIKDDAQQKERDHVMESDLSIAIDNLSLSSE*

>Glyma17g08160.2   sequence type=predicted peptide   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPRLRSMNVGDSEAARPVFGPAGNKTGSLSSRKTASKPLRKAEKLYNEAKEKKKSYEMSSVVASPQSHSASVLRRHEQLLHCNLSLNASCSSDASTDSFHSRASTGRLTRSNSLGCTRKRSVSKPRSVASDGVLESPPHGSQSKKRCAWITPNTEPCYATFHDEEWGVPVHDDKKLFELLVLSSALSELSWPAILSKRHIFREVFVDFDPVAVSKFNEKKIMAPGSTASSLLSDLKLRAIIENARQISKVLLMPGHRRVWVI*

>Glyma17g08160.3   sequence type=predicted peptide   gene model=Glyma17g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGPRLRSMNVGDSEAARPVFGPAGNKTGSLSSRKTASKPLRKAEKLYNEAKEKKKSYEMSSVVASPQSHSASVLRRHEQLLHCNLSLNASCSSDASTDSFHSRASTGRLTRSNSLGCTRKRSVSKPRSVASDGVLESPPHGSQSKKRCAWITPNTEPCYATFHDEEWGVPVHDDKKLFELLVLSSALSELSWPAILSKRHIFSSLQGSFC*

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