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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57940 | AT | Annotation by Michelle Graham. TAIR10: cyclic nucleotide gated channel 5 | chr5:23457116-23460439 FORWARD LENGTH=717 | SoyBase | E_val: 0 | ISS |
| GO:0006811 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005267 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium channel activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| KOG0498 | KOG | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | JGI | ISS | |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF7 | Panther | POTASSIUM CHANNEL PROTEIN EAG-RELATED | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF00520 | PFAM | Ion transport protein | JGI | ISS | |
| UniRef100_G7JGP4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CNGC5-like protein n=18 Tax=Medicago RepID=G7JGP4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MT20 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT20_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g08120 not represented in the dataset |
Glyma17g08120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g36560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g073500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g08120.3 sequence type=transcript gene model=Glyma17g08120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTATTTTTATTTTGGTTTAATGTCTGGCTGCGTTGCTTCCTCTTTCCTTTTCTCTGCTCTTGTGATGACAGCGACTTAATCTCTGAGATTCCGCCATAAATGCTTTCTTCGCATTCTCGCTCCGTACTCCGTCTTCTCGTTCCGTTCGGCATCGCTAATTTCTCTCCGTCGAGGTAGAAAATAGTACTTCCAGGGACTTTTAATGCTAGCTTAAGAGTATGGGCCTTTGATTTTACTATGTTGAGATACTTTATGAGAAGTATAGAGTAAACAGCAGTTTGGTTTAGAGGGTGAAAAGCTTCACAAATATCATGCTGGAAGGAAGATGATATGATATAACAAGCAAGTGGAAACTTTAGGTTCATTTGGCTGGTGCAATCGATCTTCATTATAAAGTGTAGATATACATTTGTGGTTTAACACCCGAAGAAGGTTGTTCGTATGTGATCAACTGTTGAAAGATGTTTGACTGTGGTCCCAAGTCAGAATACATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGAGGCCTTGGATTCTACACTATCTTCATCTTCTGATGCCGGAGTTATCAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTCATGGAAACAGCACAACTTCTAGGTCTTTCAAAAGGGGAATGAGAAGGGGATCTGAAGGACTGAAATCAATTGGGCGATCGCTTGGGTTGGGAGTATCTAGGGCTGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAGTTTCTGCTCTTATGGAATAAACTTTTTGTTATCTCATGCATTTTGGCCGTCTCTATAGATCCACTATTTTTTTATCTCCCAGTCATTAATGATTCATTTCATTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACAACCTTAAGGACATTGGTTGATGCTTTCTATCTTCTACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGTGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCCGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCAAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGGTGCAATAAAAATTTCCTATATTGTGGGAACCAGCACATGGAAGGTTATAGTGCTTGGAATAAAACAAGTGAAGATATTCAGTCAAGGTGCTCTGCAGATGGTGATCCTGCGCATTTTGATTATGGAATTTTTGGGCAAGTCTTGTCTTCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTAGAGAGCGTGTGAGACGGTATGACCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGGAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCTATATGTGAGAGATTGAAACCGTGTTTATTTACGGAGAATACTTACATTGTTCGGGAAGGAGATCCTGTTGATGAGATGCTGTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGATGAGTCAGACGGAGCTCATGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCTGCGCACACCCTACGTGGTGTACATCGCAATCGACTTGCCAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCTAACTAAAAATTTTCATGTATAACTACTCTCTTAAAATACTTGTTTTCGTTGACTATTATGATTGAATTTGTGAAGAAAGGTCGAAAGCAAAGTATTACACAATTATCCTGGTTACAGTTGTGAGGGTTTCAAGACTTGTAATGACTCTTGATCTGTTTCCTTGTAAATAATAGTAATCAGCCATTTTGGCTGTCTGCTACCGAGCATGTAAACTTATGTACTATTCTCAATTAATGAAGTTATAGTTACTGGTTGGCAGAATCAAGGTCTGTCTTATTTGCCATCCACATGTAATGTAAGTGACATTTAGTATGCTTGTGGTTTTCCACTGGAATCATTTTCAGTATAATTAAAGATAATTATAACTAGGCAAGTGGAGGTTATACCTCCTTAAATTC
>Glyma17g08120.2 sequence type=CDS gene model=Glyma17g08120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGACTGTGGTCCCAAGTCAGAATACATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGAGGCCTTGGATTCTACACTATCTTCATCTTCTGATGCCGGAGTTATCAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTCATGGAAACAGCACAACTTCTAGGTCTTTCAAAAGGGGAATGAGAAGGGGATCTGAAGGACTGAAATCAATTGGGCGATCGCTTGGGTTGGGAGTATCTAGGGCTGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAGTTTCTGCTCTTATGGAATAAACTTTTTGTTATCTCATGCATTTTGGCCGTCTCTATAGATCCACTATTTTTTTATCTCCCAGTCATTAATGATTCATTTCATTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACAACCTTAAGGACATTGGTTGATGCTTTCTATCTTCTACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGTGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCCGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCAAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGGTGCAATAAAAATTTCCTATATTGTGGGAACCAGCACATGGAAGGTTATAGTGCTTGGAATAAAACAAGTGAAGATATTCAGTCAAGGTGCTCTGCAGATGGTGATCCTGCGCATTTTGATTATGGAATTTTTGGGCAAGTCTTGTCTTCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTAGAGAGCGTGTGAGACGGTATGACCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGGAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCTATATGTGAGAGATTGAAACCGTGTTTATTTACGGAGAATACTTACATTGTTCGGGAAGGAGATCCTGTTGATGAGATGCTGTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGATGAGTCAGACGGAGCTCATGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCTGCGCACACCCTACGTGGTGTACATCGCAATCGACTTGCCAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCTAACTAA >Glyma17g08120.3 sequence type=CDS gene model=Glyma17g08120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGACTGTGGTCCCAAGTCAGAATACATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGAGGCCTTGGATTCTACACTATCTTCATCTTCTGATGCCGGAGTTATCAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTCATGGAAACAGCACAACTTCTAGGTCTTTCAAAAGGGGAATGAGAAGGGGATCTGAAGGACTGAAATCAATTGGGCGATCGCTTGGGTTGGGAGTATCTAGGGCTGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAGTTTCTGCTCTTATGGAATAAACTTTTTGTTATCTCATGCATTTTGGCCGTCTCTATAGATCCACTATTTTTTTATCTCCCAGTCATTAATGATTCATTTCATTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACAACCTTAAGGACATTGGTTGATGCTTTCTATCTTCTACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGTGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCCGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCAAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGGTGCAATAAAAATTTCCTATATTGTGGGAACCAGCACATGGAAGGTTATAGTGCTTGGAATAAAACAAGTGAAGATATTCAGTCAAGGTGCTCTGCAGATGGTGATCCTGCGCATTTTGATTATGGAATTTTTGGGCAAGTCTTGTCTTCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGACTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATAAGTGGCCTCATCCTTTTTGCCCTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCACCATCGCTTACTCCCACAAGATCTTAGAGAGCGTGTGAGACGGTATGACCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGGAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCTATATGTGAGAGATTGAAACCGTGTTTATTTACGGAGAATACTTACATTGTTCGGGAAGGAGATCCTGTTGATGAGATGCTGTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGATGAGTCAGACGGAGCTCATGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCTGCGCACACCCTACGTGGTGTACATCGCAATCGACTTGCCAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCTAACTAA
>Glyma17g08120.2 sequence type=predicted peptide gene model=Glyma17g08120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFDCGPKSEYMGGQRENFLRLEALDSTLSSSSDAGVIKSGFSIDKLSHGHGNSTTSRSFKRGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSFHCLGIDRKLATIVTTLRTLVDAFYLLHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDIRCNKNFLYCGNQHMEGYSAWNKTSEDIQSRCSADGDPAHFDYGIFGQVLSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEDESDGAHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAN* >Glyma17g08120.3 sequence type=predicted peptide gene model=Glyma17g08120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFDCGPKSEYMGGQRENFLRLEALDSTLSSSSDAGVIKSGFSIDKLSHGHGNSTTSRSFKRGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSFHCLGIDRKLATIVTTLRTLVDAFYLLHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDIRCNKNFLYCGNQHMEGYSAWNKTSEDIQSRCSADGDPAHFDYGIFGQVLSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEDESDGAHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAN*
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