Glyma17g08100 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g08100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5996923
stop:	6000938
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g08100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30600	AT	Annotation by Michelle Graham. TAIR10: signal recognition particle receptor alpha subunit family protein \| chr4:14938142-14940600 REVERSE LENGTH=634	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006614	GO-bp	Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0781	KOG	Signal recognition particle receptor, alpha subunit	JGI		ISS
PTHR11564	Panther	GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS	JGI		ISS
PTHR11564:SF8	Panther	SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA)	JGI		ISS
PF00448	PFAM	SRP54-type protein, GTPase domain	JGI		ISS
PF02881	PFAM	SRP54-type protein, helical bundle domain	JGI		ISS
PF04086	PFAM	Signal recognition particle, alpha subunit, N-terminal	JGI		ISS
UniRef100_G7JGN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle receptor subunit alpha n=1 Tax=Medicago truncatula RepID=G7JGN9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g08100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g08100

Paralog	Evidence	Comments
Glyma02g36591	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g08100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g073300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g08100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g08100

Limit To All Plant Sequences

>Glyma17g08100.3   sequence type=transcript   gene model=Glyma17g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTTCTCTCTCTTTTCATCAGCTTCGCGAATTCGCCAAATCAGAAAACCTCTCTCTCTCTCTCTCTCACCCTTCCCAGTGATCAATTCAACGATGTTAGAGCAGTTGCTGATATTCACGCGCGGAGGGCTCATCCTCTGGACCTGCAACCACCTCAGCAACGCCCTGAGGGGATCTCCGATCGACACGTTGATCCGATCCTGCCTCCTGGAGGAGCGATCCGGTGCGGCCTCCTTCAACTACGACGCACCTGGAGCCGCATACTCTCTCAAATGGACCTTCCACAACGACCTAGGCCTCGTCTTTGTCGCCGTCTATCAACGCGTCCTCCACCTCTTGTACGTCGACGATTTGCTCGCCGCCGTCAAGCGCGAGTTCTCGCGCCTCTACCACCCCCAAAAAACCGCCTACCGAGATTTTGACGAGATCTTTCAGCAGCTCCAGATCGAGGCCGAGTCTCGCTCCGAGAATTTCAAAAAACCCAACCCTGTCCCCGCGCTGGCTCCCAATAGGAAACAAAACGGCACGTGGCAGGGGCAGGGGTTAGGGCAAAACGCCGGATCAGAAAAAAAAAGTGATGGAGATGGGAAGAAAGGGCGTAAATTGGAGAATGATAATTTTTCTGTAGCTAATTCTAATTCTAATGCTAATGTTAACCATAGTGGTGGTAAGAGTAGTGTGAATAATAATATTGGGAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAGGCTTCAGAAGCTTAAAGGAAAAAAAGGGAATGGGAACGGGAAGAAGAAAGATGCTCTTGTTGTTGCTGCTGCCAAGGGAGAGCCCAAAAAGGTGGATAAGCCAAACAGGGTTTGGGATCAACCGGCGCCGCAAACCAAACTGGACTTTACTGATCACGTGGATGGAGATGGGGATAGAAGCGCTGACTTTTTGGCTAAGGAGCAAGGAGAGAGTATGATGGATAAAGAAGAGATTCTTAGCAGTGATAGTGAGGTTGAAGATGATGATGATGATACTGGAAAGGATAACATGCCTGTGGCTAAAAAGAAGGGTTGGTTTTCCTCGATGTTCCAGAGTATTGCAGGAAAGGCTAATTTGGAGAAGTCAGACCTGGAACCAGCTTTGAAAGCTCTGAAGGACAGGCTCATGACCAAGAATGTGGCCGAGGAAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGCAAAAAGCTAGCTTCGTTTACAAGGATATCTTCAACAGTGCATACAGCAATGGAAGAAGCACTTGTTCGTATTTTAACCCCTAGGCGTTCCATTGACATATTGAGGGATGTTCATGCTGCCAAGGAGCAAAGGAAGCCATATGTTGTTGTGTTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTCTGCAACACAACGTCAGTGTCATGATGGCTGCTTGTGATACATTTCGATCTGGAGCTGTTGAGCAGCTGCGGACCCATGCACGCAGACTTCAGATTCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCCATTGTAGCAAAAGAAGCAATTCAGGAAGCTGCGCGCAATGGTTCAGATGTGGTTCTAGTTGATACAGCTGGCCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTCGTCTACCTCAACAATCCTGACCTTATCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAATTCAACCAGAAATTAGCCGACCTCTCAACATCTCCCACACCCAGATTGATCGATGGGATCTTGCTCACGAAGTTTGACACTATCGATGATAAGGTGGGAGCTGCACTCTCAATGGTTTACGTATCTGGAGCTCCAGTAATGTTTGTGGGCTGCGGACAGTCCTATACTGACCTCAAGAAACTCAACGTCAAGTCAATTGCGAAGACTCTCCTTAAATGAGGGAACAACATAAACCTGTCATGAATGTTTCTGTTTGATGAGTAACTTGATTATCCCCGTAGATCCCCATTACATCGTAAGACAACATTGACGCAATTTGGTTTGTTTAATTTATATTGGTAAGCTTCTTTCCTCTGTTCACCATGAGAATAACGCGTAAGGTGTAACTCTTATCATGTGTAGTACATTTAATTTTCCTCACCTTACTAAGTGAATAATCCATGCGAATCGTTCAAATATTTATTGCGACAAATGCATCGATATCTTTAAATTATGTTCGAGATTTTTGCAAAATGAAACACATATAAGATTTA

Coding sequences of Glyma17g08100

Limit To All Plant Sequences

>Glyma17g08100.2   sequence type=CDS   gene model=Glyma17g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGCAGTTGCTGATATTCACGCGCGGAGGGCTCATCCTCTGGACCTGCAACCACCTCAGCAACGCCCTGAGGGGATCTCCGATCGACACGTTGATCCGATCCTGCCTCCTGGAGGAGCGATCCGGTGCGGCCTCCTTCAACTACGACGCACCTGGAGCCGCATACTCTCTCAAATGGACCTTCCACAACGACCTAGGCCTCGTCTTTGTCGCCGTCTATCAACGCGTCCTCCACCTCTTGTACGTCGACGATTTGCTCGCCGCCGTCAAGCGCGAGTTCTCGCGCCTCTACCACCCCCAAAAAACCGCCTACCGAGATTTTGACGAGATCTTTCAGCAGCTCCAGATCGAGGCCGAGTCTCGCTCCGAGAATTTCAAAAAACCCAACCCTGTCCCCGCGCTGGCTCCCAATAGGAAACAAAACGGCACGTGGCAGGGGCAGGGGTTAGGGCAAAACGCCGGATCAGAAAAAAAAAGTGATGGAGATGGGAAGAAAGGGCGTAAATTGGAGAATGATAATTTTTCTGTAGCTAATTCTAATTCTAATGCTAATGTTAACCATAGTGGTGGTAAGAGTAGTGTGAATAATAATATTGGGAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAGGCTTCAGAAGCTTAAAGGAAAAAAAGGGAATGGGAACGGGAAGAAGAAAGATGCTCTTGTTGTTGCTGCTGCCAAGGGAGAGCCCAAAAAGGTGGATAAGCCAAACAGGGTTTGGGATCAACCGGCGCCGCAAACCAAACTGGACTTTACTGATCACGTGGATGGAGATGGGGATAGAAGCGCTGACTTTTTGGCTAAGGAGCAAGGAGAGAGTATGATGGATAAAGAAGAGATTCTTAGCAGTGATAGTGAGGTTGAAGATGATGATGATGATACTGGAAAGGATAACATGCCTGTGGCTAAAAAGAAGGGTTGGTTTTCCTCGATGTTCCAGAGTATTGCAGGAAAGGCTAATTTGGAGAAGTCAGACCTGGAACCAGCTTTGAAAGCTCTGAAGGACAGGCTCATGACCAAGAATGTGGCCGAGGAAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGCAAAAAGCTAGCTTCGTTTACAAGGATATCTTCAACAGTGCATACAGCAATGGAAGAAGCACTTGTTCGTATTTTAACCCCTAGGCGTTCCATTGACATATTGAGGGATGTTCATGCTGCCAAGGAGCAAAGGAAGCCATATGTTGTTGTGTTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTCTGCAACACAACGTCAGTGTCATGATGGCTGCTTGTGATACATTTCGATCTGGAGCTGTTGAGCAGCTGCGGACCCATGCACGCAGACTTCAGATTCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCCATTGTAGCAAAAGAAGCAATTCAGGAAGCTGCGCGCAATGGTTCAGATGTGGTTCTAGTTGATACAGCTGGCCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTCGTCTACCTCAACAATCCTGACCTTATCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAATTCAACCAGAAATTAGCCGACCTCTCAACATCTCCCACACCCAGATTGATCGATGGGATCTTGCTCACGAAGTTTGACACTATCGATGATAAGGTGGGAGCTGCACTCTCAATGGTTTACGTATCTGGAGCTCCAGTAATGTTTGTGGGCTGCGGACAGTCCTATACTGACCTCAAGAAACTCAACGTCAAGTCAATTGCGAAGACTCTCCTTAAATGA

>Glyma17g08100.3   sequence type=CDS   gene model=Glyma17g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGCAGTTGCTGATATTCACGCGCGGAGGGCTCATCCTCTGGACCTGCAACCACCTCAGCAACGCCCTGAGGGGATCTCCGATCGACACGTTGATCCGATCCTGCCTCCTGGAGGAGCGATCCGGTGCGGCCTCCTTCAACTACGACGCACCTGGAGCCGCATACTCTCTCAAATGGACCTTCCACAACGACCTAGGCCTCGTCTTTGTCGCCGTCTATCAACGCGTCCTCCACCTCTTGTACGTCGACGATTTGCTCGCCGCCGTCAAGCGCGAGTTCTCGCGCCTCTACCACCCCCAAAAAACCGCCTACCGAGATTTTGACGAGATCTTTCAGCAGCTCCAGATCGAGGCCGAGTCTCGCTCCGAGAATTTCAAAAAACCCAACCCTGTCCCCGCGCTGGCTCCCAATAGGAAACAAAACGGCACGTGGCAGGGGCAGGGGTTAGGGCAAAACGCCGGATCAGAAAAAAAAAGTGATGGAGATGGGAAGAAAGGGCGTAAATTGGAGAATGATAATTTTTCTGTAGCTAATTCTAATTCTAATGCTAATGTTAACCATAGTGGTGGTAAGAGTAGTGTGAATAATAATATTGGGAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAGGCTTCAGAAGCTTAAAGGAAAAAAAGGGAATGGGAACGGGAAGAAGAAAGATGCTCTTGTTGTTGCTGCTGCCAAGGGAGAGCCCAAAAAGGTGGATAAGCCAAACAGGGTTTGGGATCAACCGGCGCCGCAAACCAAACTGGACTTTACTGATCACGTGGATGGAGATGGGGATAGAAGCGCTGACTTTTTGGCTAAGGAGCAAGGAGAGAGTATGATGGATAAAGAAGAGATTCTTAGCAGTGATAGTGAGGTTGAAGATGATGATGATGATACTGGAAAGGATAACATGCCTGTGGCTAAAAAGAAGGGTTGGTTTTCCTCGATGTTCCAGAGTATTGCAGGAAAGGCTAATTTGGAGAAGTCAGACCTGGAACCAGCTTTGAAAGCTCTGAAGGACAGGCTCATGACCAAGAATGTGGCCGAGGAAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGCAAAAAGCTAGCTTCGTTTACAAGGATATCTTCAACAGTGCATACAGCAATGGAAGAAGCACTTGTTCGTATTTTAACCCCTAGGCGTTCCATTGACATATTGAGGGATGTTCATGCTGCCAAGGAGCAAAGGAAGCCATATGTTGTTGTGTTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTCTGCAACACAACGTCAGTGTCATGATGGCTGCTTGTGATACATTTCGATCTGGAGCTGTTGAGCAGCTGCGGACCCATGCACGCAGACTTCAGATTCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCCATTGTAGCAAAAGAAGCAATTCAGGAAGCTGCGCGCAATGGTTCAGATGTGGTTCTAGTTGATACAGCTGGCCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTCGTCTACCTCAACAATCCTGACCTTATCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAATTCAACCAGAAATTAGCCGACCTCTCAACATCTCCCACACCCAGATTGATCGATGGGATCTTGCTCACGAAGTTTGACACTATCGATGATAAGGTGGGAGCTGCACTCTCAATGGTTTACGTATCTGGAGCTCCAGTAATGTTTGTGGGCTGCGGACAGTCCTATACTGACCTCAAGAAACTCAACGTCAAGTCAATTGCGAAGACTCTCCTTAAATGA

Predicted protein sequences of Glyma17g08100

Limit To All Plant Sequences

>Glyma17g08100.2   sequence type=predicted peptide   gene model=Glyma17g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQLLIFTRGGLILWTCNHLSNALRGSPIDTLIRSCLLEERSGAASFNYDAPGAAYSLKWTFHNDLGLVFVAVYQRVLHLLYVDDLLAAVKREFSRLYHPQKTAYRDFDEIFQQLQIEAESRSENFKKPNPVPALAPNRKQNGTWQGQGLGQNAGSEKKSDGDGKKGRKLENDNFSVANSNSNANVNHSGGKSSVNNNIGKENESSNVGAFDVNRLQKLKGKKGNGNGKKKDALVVAAAKGEPKKVDKPNRVWDQPAPQTKLDFTDHVDGDGDRSADFLAKEQGESMMDKEEILSSDSEVEDDDDDTGKDNMPVAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHTAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAARNGSDVVLVDTAGRMQDNEPLMRALSKLVYLNNPDLILFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIAKTLLK*

>Glyma17g08100.3   sequence type=predicted peptide   gene model=Glyma17g08100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQLLIFTRGGLILWTCNHLSNALRGSPIDTLIRSCLLEERSGAASFNYDAPGAAYSLKWTFHNDLGLVFVAVYQRVLHLLYVDDLLAAVKREFSRLYHPQKTAYRDFDEIFQQLQIEAESRSENFKKPNPVPALAPNRKQNGTWQGQGLGQNAGSEKKSDGDGKKGRKLENDNFSVANSNSNANVNHSGGKSSVNNNIGKENESSNVGAFDVNRLQKLKGKKGNGNGKKKDALVVAAAKGEPKKVDKPNRVWDQPAPQTKLDFTDHVDGDGDRSADFLAKEQGESMMDKEEILSSDSEVEDDDDDTGKDNMPVAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHTAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAARNGSDVVLVDTAGRMQDNEPLMRALSKLVYLNNPDLILFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIAKTLLK*

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