Glyma17g07990 - SoyBase

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Report for Sequence Feature Glyma17g07990

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5910263
stop:	5913383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30700	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:14962617-14964995 REVERSE LENGTH=792	SoyBase	E_val: 0	ISS
GO:0000963	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial RNA processing	SoyBase	N/A	ISS
GO:0016554	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytidine to uridine editing	SoyBase	N/A	ISS
GO:0080156	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF145	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JFJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JFJ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MT07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07990

Paralog	Evidence	Comments
Glyma02g36730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g072100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07990

Limit To All Plant Sequences

>Glyma17g07990.1   sequence type=CDS   gene model=Glyma17g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCGTGGGGACATTAGCCGCAACACGCTCCTCGCCCTCATCAGCAAAGCGTGCACCTTCCCTCACCTTGCCGAAACCCACGCGCAGCTCATCCGCAACGGTTACCAGCACGACCTCGCCACCGTCACCAAGCTCACCCAGAAGCTCTTCGACGTCGGCGCCACGCGCCACGCACGTGCACTCTTCTTCTCCGTTCCCAAACCCGACATCTTCCTCTTCAACGTACTCATCAAAGGCTTCTCCTTTTCCCCCGACGCCTCCTCCATTTCCTTCTACACCCATCTCCTCAAAAACACGACACTCTCCCCCGACAACTTCACCTATGCCTTCGCCATCAGCGCTTCCCCCGACGACAACCTTGGCATGTGTCTGCACGCGCATGCTGTCGTCGACGGGTTTGACTCCAACCTCTTTGTCGCGTCCGCGCTCGTTGACTTGTACTGTAAGTTTTCGCGCGTGGCGTATGCCAGGAAGGTGTTTGATAAAATGCCGGATAGAGACACCGTGTTGTGGAACACCATGATTACTGGGTTGGTGAGGAATTGTTGTTATGATGATTCTGTTCAAGTGTTTAAGGACATGGTGGCGCAAGGGGTTCGGTTGGATTCCACCACGGTGGCGACCGTGCTTCCCGCGGTTGCCGAGATGCAAGAGGTGAAGGTTGGGATGGGGATTCAGTGTTTGGCTTTGAAACTTGGATTTCATTTTGATGACTATGTTTTGACGGGTTTGATTTCGGTTTTTTCGAAATGTGAGGATGTTGACACGGCGAGGTTGTTGTTTGGGATGATTAGGAAGCCGGATTTGGTTTCTTACAATGCCTTGATTTCTGGGTTTAGTTGTAATGGTGAGACTGAGTGTGCGGTGAAGTATTTTAGAGAATTGCTTGTTTCCGGGCAGAGAGTGAGTTCTAGCACTATGGTTGGGTTGATTCCGGTATCTTCTCCATTTGGGCATTTGCATTTGGCTTGCTGTATTCAAGGGTTTTGTGTGAAGTCTGGTACTATTTTGCAACCCTCTGTTTCAACTGCACTCACGACTATTTACAGCAGGCTCAATGAAATTGATTTGGCAAGGCAGTTATTTGATGAATCGTCGGAGAAAACTGTGGCTGCTTGGAATGCGATGATCTCAGGTTATGCACAGAGTGGTTTAACAGAGATGGCTATCTCTCTTTTTCAGGAAATGATGACGACTGAATTTACTCCAAATCCAGTTACGATCACGAGTATTCTTTCAGCTTGTGCTCAACTAGGAGCACTGAGTTTTGGTAAATCGGTTCATCAGTTGATTAAAAGCAAAAATCTGGAGCAAAACATTTATGTTTCAACTGCTCTGATTGACATGTATGCCAAGTGTGGGAATATTTCAGAGGCTTCGCAATTGTTTGACTTGACGAGTGAAAAGAACACTGTCACTTGGAATACTATGATTTTTGGTTATGGGCTCCATGGATATGGGGATGAAGCACTTAAACTTTTCAATGAGATGTTGCATTTGGGGTTTCAACCTTCTAGCGTTACTTTTCTTTCAGTTTTATATGCTTGCAGCCATGCTGGCCTGGTAAGAGAAGGAGATGAAATTTTCCATGCTATGGTCAATAAATACAGGATTGAGCCCTTAGCTGAACACTATGCATGCATGGTAGACATTCTGGGACGAGCTGGACAGTTAGAAAAGGCCTTGGAATTTATAAGAAAAATGCCTGTTGAGCCTGGTCCTGCAGTGTGGGGTACATTACTTGGTGCTTGCATGATTCACAAGGACACGAACTTAGCCCGTGTGGCTTCAGAAAGGCTATTTGAACTGGATCCAGGGAATGTAGGATACTATGTCTTACTATCTAATATATACTCTGTGGAGAGAAACTTCCCAAAGGCTGCTTCAGTACGGGAAGCAGTTAAGAAAAGAAATTTGTCAAAGACTCCGGGGTGCACTCTAATTGAGGTTAATGGGACCCCACATGTCTTTGTATGCGGTGATCGTTCTCATTCTCAAACAACATCTATCTATGCAAAGCTAGAGGAGTTAACAGGCAAGATGAGGGAGATGGGGTATCAGTCAGAGACAGTCACTGCCTTGCATGATGTGGAAGAAGAAGAAAAGGAACTCATGTTTAATGTTCATAGTGAGAAGCTAGCTATTGCTTTTGGCCTTATTACTACTGAACCTGGTACTGAGATCAGGATCATCAAGAATCTTCGAGTTTGTTTAGATTGTCATGCTGCAACTAAGTTTATTTCAAAGATCACGGAAAGAGTAATTGTAGTGAGGGATGCTAACAGATTCCACCATTTCAAAGATGGGATCTGTTCTTGTGGCGATTATTGGTGA

Predicted protein sequences of Glyma17g07990

Limit To All Plant Sequences

>Glyma17g07990.1   sequence type=predicted peptide   gene model=Glyma17g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRGDISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW*

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