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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18430 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175 | SoyBase | E_val: 6.00E-84 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG0034 | KOG | Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein | JGI | ISS | |
| PTHR23056 | Panther | CALCINEURIN B | JGI | ISS | |
| PTHR23056:SF4 | Panther | CALCINEURIN B SUBUNIT | JGI | ISS | |
| UniRef100_G7JFI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin subunit B n=1 Tax=Medicago truncatula RepID=G7JFI8_MEDTR | SoyBase | E_val: 4.00E-100 | ISS |
| UniRef100_I1MT03 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT03_SOYBN | SoyBase | E_val: 6.00E-152 | ISS |
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Glyma17g07970 not represented in the dataset |
Glyma17g07970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g36753 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g071900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07970.2 sequence type=transcript gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGTGTTCCGGTTCCACAGGGCCAAAATGGACCTTTTCAAAACTCATTTATGCGGTAGTAGAAAGTTGTTGGGCAGTTGGCGAATGACAATGCAATGCTCGTGTCGTTTTGGTGTCACTGAGTCAGTCTGAGTAGGAAGAGGAAGCCATGGGCAACACATCCTCCATGCTCACCCAATACGACATCGAAGAGGTTCAGCAACATTGCAAAAACGCTTTTACGCAACAGGAGATAGTTTCTCTGTACCAACGCTTCTGTCAGCTGGATCGCAACAACTGCGGTTTCATCCCTTCCGATGAATTCCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGGATGCTGGATGGGTTGAACTTCAAGGAATTTGTGGCCTTCTTGTCCGCCTTCAGTCCCCGTGCCACTCTCCACCACAAAATTGAATTCATTTTCAAGGTCTATGACACCGATTGCAATGGAAAAGTTACCTTCCATGACATGTTGAGGGCTTTAAGGGATTTGAGTGGACCCTTCATGTCTGAGCAACAGAGAGAGGACGTTCTGACACAGGTCCTTGAGGAAGCTGGCTATGCAAAGGATTCTTCATTAGTCTTGTCTGACTTCATGAAGATTCTTGGCAATTCGGGTTTGAAGATGGAAGTAGAGGTTCCGGTGGATTAGAGTGAGGATAATACAATTCCCTTTTTGAGTTTTCTTTTTTCTTTTTTTTGAGGATAACTTTCCCTTTCAGTTTGATGACGGAGGTTCTTGGTTCTGGTATTTAGTTCTTCCTCTTAATGGGTAAAAGATTATTTGTTCAGTGATTAATTACTGCAAACAAAGTTATGGATTATATAATGTTTAACAAATGCTTTCAAAACTGAATTTCTCTGAAGTTTTTTTATGCTTGATAATTTTTATTTGTTATGAACTAGATTTGGGAGATTTTATTTCTCGTGACCGACTTAGGTTTTTGAAGTAAGT >Glyma17g07970.3 sequence type=transcript gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGTGTTCCGGTTCCACAGGGCCAAAATGGACCTTTTCAAAACTCATTTATGCGGTAGTAGAAAGTTGTTGGGCAGTTGGCGAATGACAATGCAATGCTCGTGTCGTTTTGGTGTCACTGAGTCAGTCTGAGTAGGAAGAGGAAGCCATGGGCAACACATCCTCCATGCTCACCCAATACGACATCGAAGAGGTTCAGCAACATTGCAAAAACGCTTTTACGCAACAGGAGATAGTTTCTCTGTACCAACGCTTCTGTCAGCTGGATCGCAACAACTGCGGTTTCATCCCTTCCGATGAATTCCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGGATGCTGGATGGGTTGAACTTCAAGGAATTTGTGGCCTTCTTGTCCGCCTTCAGTCCCCGTGCCACTCTCCACCACAAAATTGAATTCATTTTCAAGGTCTATGACACCGATTGCAATGGAAAAGTTACCTTCCATGACATGTTGAGGGCTTTAAGGGATTTGAGTGGACCCTTCATGTCTGAGCAACAGAGAGAGGACGTTCTGACACAGGTCCTTGAGGAAGCTGGCTATGCAAAGGATTCTTCATTAGTCTTGTCTGACTTCATGAAGTGGCAAGGTCTCTTATCTTCACCTGCCAATGTGTTAAACCAACAGTAATATCTTCATTTGGACCATGGGTCATAATTAGCACAAAACTCATGCTTGTCTTGGCCAATGGATATTGCATTTTCACACTGATGACTGTCTGAGTGTCATAGCCCAGAACTCTAGCTCATGATTGTTTGAGGGTCATACATTTTCATACCCATGCTGGTTTTCCACCATGCATACTGAACACTGCTGTTAGCTTGATATTTGTTAGTTTGCCATCTTTCATATGAACAATGCTTGACCATCCCCTTTTGCTGATAGATTCTTGGCAATTCGGGTTTGAAGATGGAAGTAGAGGTTCCGGTGGATTAGAGTGAGGATAATACAATTCCCTTTTTGAGTTTTCTTTTTTCTTTTTTTTGAGGATAACTTTCCCTTTCAGTTTGATGACGGAGGTTCTTGGTTCTGGTATTTAGTTCTTCCTCTTAATGGGTAAAAGATTATTTGTTCAGTGATTAATTACTGCAAACAAAGTTATGGATTATATAATGTTTAACAAATGCTTTCAAAACTGAATTTCTCTGAAGTTTTTTTATGCTTGATAATTTTTATTTGTTATGAACTAGATTTGGGAGATTTTATTTCTCGTGACCGACTTAGGTTTTTGAAGTAAGT
>Glyma17g07970.1 sequence type=CDS gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAACACATCCTCCATGCTCACCCAATACGACATCGAAGAGGTTCAGCAACATTGCAAAAACGCTTTTACGCAACAGGAGATAGTTTCTCTGTACCAACGCTTCTGTCAGCTGGATCGCAACAACTGCGGTTTCATCCCTTCCGATGAATTCCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGGATGCTGGATGGGTTGAACTTCAAGGAATTTGTGGCCTTCTTGTCCGCCTTCAGTCCCCGTGCCACTCTCCACCACAAAATTGAATTCATTTTCAAGGTCTATGACACCGATTGCAATGGAAAAGTTACCTTCCATGACATGTTGAGGGCTTTAAGGGATTTGAGTGGACCCTTCATGTCTGAGCAACAGAGAGAGGACGTTCTGACACAGGTCCTTGAGGAAGCTGGCTATGCAAAGGATTCTTCATTAGTCTTGTCTGACTTCATGAAGCTTGCAGTGGCAAGGTCTCTTATCTTCACCTGCCAATGTGTTAAACCAACAGTAATATCTTCATTTGGACCATGGGTCATAATTAGCACAAAACTCATGCTTGTCTTGGCCAATGGATATTGCATTTTCACACTGATGACTGTCTGA >Glyma17g07970.2 sequence type=CDS gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAACACATCCTCCATGCTCACCCAATACGACATCGAAGAGGTTCAGCAACATTGCAAAAACGCTTTTACGCAACAGGAGATAGTTTCTCTGTACCAACGCTTCTGTCAGCTGGATCGCAACAACTGCGGTTTCATCCCTTCCGATGAATTCCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGGATGCTGGATGGGTTGAACTTCAAGGAATTTGTGGCCTTCTTGTCCGCCTTCAGTCCCCGTGCCACTCTCCACCACAAAATTGAATTCATTTTCAAGGTCTATGACACCGATTGCAATGGAAAAGTTACCTTCCATGACATGTTGAGGGCTTTAAGGGATTTGAGTGGACCCTTCATGTCTGAGCAACAGAGAGAGGACGTTCTGACACAGGTCCTTGAGGAAGCTGGCTATGCAAAGGATTCTTCATTAGTCTTGTCTGACTTCATGAAGATTCTTGGCAATTCGGGTTTGAAGATGGAAGTAGAGGTTCCGGTGGATTAG >Glyma17g07970.3 sequence type=CDS gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAACACATCCTCCATGCTCACCCAATACGACATCGAAGAGGTTCAGCAACATTGCAAAAACGCTTTTACGCAACAGGAGATAGTTTCTCTGTACCAACGCTTCTGTCAGCTGGATCGCAACAACTGCGGTTTCATCCCTTCCGATGAATTCCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGGATGCTGGATGGGTTGAACTTCAAGGAATTTGTGGCCTTCTTGTCCGCCTTCAGTCCCCGTGCCACTCTCCACCACAAAATTGAATTCATTTTCAAGGTCTATGACACCGATTGCAATGGAAAAGTTACCTTCCATGACATGTTGAGGGCTTTAAGGGATTTGAGTGGACCCTTCATGTCTGAGCAACAGAGAGAGGACGTTCTGACACAGGTCCTTGAGGAAGCTGGCTATGCAAAGGATTCTTCATTAGTCTTGTCTGACTTCATGAAGTGGCAAGGTCTCTTATCTTCACCTGCCAATGTGTTAAACCAACAGTAA
>Glyma17g07970.1 sequence type=predicted peptide gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNTSSMLTQYDIEEVQQHCKNAFTQQEIVSLYQRFCQLDRNNCGFIPSDEFLSIPEFAVNPLSQSLLRMLDGLNFKEFVAFLSAFSPRATLHHKIEFIFKVYDTDCNGKVTFHDMLRALRDLSGPFMSEQQREDVLTQVLEEAGYAKDSSLVLSDFMKLAVARSLIFTCQCVKPTVISSFGPWVIISTKLMLVLANGYCIFTLMTV* >Glyma17g07970.2 sequence type=predicted peptide gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNTSSMLTQYDIEEVQQHCKNAFTQQEIVSLYQRFCQLDRNNCGFIPSDEFLSIPEFAVNPLSQSLLRMLDGLNFKEFVAFLSAFSPRATLHHKIEFIFKVYDTDCNGKVTFHDMLRALRDLSGPFMSEQQREDVLTQVLEEAGYAKDSSLVLSDFMKILGNSGLKMEVEVPVD* >Glyma17g07970.3 sequence type=predicted peptide gene model=Glyma17g07970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNTSSMLTQYDIEEVQQHCKNAFTQQEIVSLYQRFCQLDRNNCGFIPSDEFLSIPEFAVNPLSQSLLRMLDGLNFKEFVAFLSAFSPRATLHHKIEFIFKVYDTDCNGKVTFHDMLRALRDLSGPFMSEQQREDVLTQVLEEAGYAKDSSLVLSDFMKWQGLLSSPANVLNQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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