SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30790 | AT | Annotation by Michelle Graham. TAIR10: INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). | chr4:14993383-14997785 REVERSE LENGTH=1148 | SoyBase | E_val: 0 | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| PF10377 | PFAM | Autophagy-related protein 11 | JGI | ISS | |
| UniRef100_I1MSZ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSZ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g07920 not represented in the dataset |
Glyma17g07920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g36800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g071400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07920.1 sequence type=CDS gene model=Glyma17g07920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGGAAGTGTTCATATTCAATAAAGCAAGGCTTCAGAACAACTCGCCTGTTCCACCGCCGGAGCAAGTTGATATCCCCAGTCATTTGGAGCCTCCACCGCCAGCCTCTTCCCCATGATCCACACCCTCTTGATGATGCTTCGGATCCTGCTTTAAAGGCTTTACCTTCTTACGAGCGGCAATTCAGATACCATTATCATCGGGGGCATGTGATTTATACTGGTACCATGATGAAATATGAGCATTGTGAGAGGCTTTTGAGAGAACAGATGGTCCAAGAAAGAGCGGTGGAGGTTGCAAGGGGTAATTTGGATCAGTACTATCGAATGATTAACCAAAACTATGGGGACTTCATGAAACGTTATATGCAACAATGCAGGATGCATTCTGATCTTTTGGTGAATTTCGGGAAGGATATTGAGAAACTAAGGTCCATCAAACTTCATCCTGCTTTACAAACTGCTAATCGCAAGTGCTTACTGGATTTGGTCAAGGAAGAAAACTTGAGGAAGTCGGTGGAGAATTGCACCAGCTCCCACAAGCAGTTTGAGAATAAAGTTTCACAATTTAAGCAGACTTTTGGGGAAGTGAAGCGTCGGGCTGAGGAATTGTTGTCCAGCAGGGATTTCTTGCCCATCAAGAATTTAGAACAAGCAATTAAAGAACACCAGAGATATATAAATGAACAAAAGAGTATCATGCAATCTCTGAGCAAGGATGTTAACACTGTAAAGAAACTGGTAGATGATTGTCTATCCTCCCAATTGTCCTCCTCACTCCGTCCTCATGATGCAGTTTCAGCCTTGGGTCCTATGTATGATGTTCATGACAAAAATCACTTGCCTAAAATGCAGGCTTGTGATCGTGCTATTTCAAAGCTACTTGAGTTTTGCAAGGAGAACAAGAATGAAATGAATCTTTTTGTTCATAATTACATGCAAAACATAACTTATGTTTCTTATCTCATCAAAGATCAGAAGCTACAATTCCCTGTTTTTAAAGAGGCAATGGCTCGTCAGGATGGCTTATTTATGGATTTAAAGTTGTTCCATGGTATTGGTCCTGCATACAGAGCTTGCCTTGCTGAAATAGTGAGACGAAAGGCTTCTATGAAGTTGTACATGGGCATGGCTGGGCAAATGGCTGAAAGGCTTGCTATAAAACGGGAGGCTGAGCTCAGGAGACGGGAGGAGTTTTTGAGACTTCATAGTTCATGCATTCCTAAAGAAGTTTTAGCATCTATGGGATTGTTTGACACTCCAAACCAATGTGATGTCAATATAGCTCCATTTGATGGTGGTTTGCTTAATATTGACATATCAGATGTGGAACGTTATGCTCCTGAATATCTAACGGGAGTAACTTCCAAGCTGGATAAGCAAGGAAGCTCTAAAAGTTCATCTGCTTTGAGTAGTGATAGCTCTCACTTGGCTGAGGCTGTAGATATTACTGGTGACTCAATTGAGAGAGATGATTCCGAGGACTTGCTTGATGGCAGTGAGTTGCTTGAAATTGCTGGAACCTGCAAGATGGAAGTTGAGAATGCAAAACTGAAAGCTGAACTTGCTGGTAGAATAGCTTTAATATGTTCTCTCTGTCCTGAGTTAGAGTACGAGTCATTGGATGATGAAAGGGTGAATAATATATTGAGGAATGCCGCAGAGAAGACACAAGAAGCCTTGCATTTGAAAGATGAATATATTAAACATGTTCAATCCATGCTTAAGATGAAGCAGATGCTATGCGTGTCCTATGAGAAACGTATTCAAGAATTGGAGCAGAAATTGTCAGATCAGTATGTGCAGGGGCAGAAGATGTCCAGTGTAAATGATGCAGCTGACCTTCCCCTTGTGGCTGGGAAGACAGATAATTACAAGTCAGAATCTATCAGTGGTGAAGCCAACATGCCTTGCATATCTACTTCTGAGCCCATGGATGAGGTTTCATGCATCTCAAGTTCCTTGGATGCAAAACTTGGTTTGTTCATGTTCACAGAGCATACTGGTAAAGCATTAGATGGGGTGGATGAAAACATGTTGGATTCCTCTGGAGTTCAGAACCCACAGTTGGATTCATCTATGATGGAGCCTCATCGCGAAGAAGCACAGAGTGGTGATAAAGATAAAAAAGGCAAGATAATAGTACAATTGGGCATGTCACTGACAAACAGTTCTACTGGTGAGAACATGCCTGTGTCACATGATCTTGTACCCTGTGACTCGGCAGTTTGTCAAGACTTGGAATCCAAAGTAAATGATGAAAAGGTGTTGGAACTACAAAGTGCACTTGCAGATAAGTCAAATCAATTGAATGAAACTGAAACCAAGCTTAAAACTGTTATGGAGAAGGTTGCTGTGCTCAGAAGGGAGTTGGAAGCAAGTCAAAAACTACTTGATGAATCTCAGATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCAAGAGAGGAAGCTCAGACACAAAAAAGTTCTGCTGACAGGAGGGCCTCGGAATATAGTTTACTGCGTGCATCCGTTATTAAAACGCGCAGCTTTTTTGAAAGACTCAAGACCTGTGTTTATTCTCCTGGTGGTGTGGCTGGTTTTGCAGATTCCCTACGTAATTTGGCGCAATCTTTGGCCAATTCTGCTAATGACAGAGATGATGATGATATTGCTGAATTCCGGAAATGCATTCGTGTATTAGCTGATAGAGTTGGTTTCTTATCTAAGCACCGGGAAGAGCTGCATGAGAAGAACACAAGAACAGAAGCTGCTAACGAACAGCTGCGGAAAGAATTGGAGGAGAAAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTGCCTTTGTGCTCACTTCAGCTGGGCATTATGAGGCAATTACTAGGAACTGCTCTAACTACTACTTATCTGATGAATCTGTAGCCCTGTTTGCAGACCATCTTCCTACCAGACCTAACTACATCGTTGGACAAATTGTGCATATTGAACGCCAAATTGTGAAGACGCTGCCGCCTCGGCCTGAGCATGGTAGGGCTGATAAATTTACCCCTGACAAGGGGGCTGACTGGTTGACCTTGAATTCAGGATCAACTCCGAACCCTTACGGTCTCCCTGTTGGCTGTGAATATTTCCTAGTGACAGTAGCCATGTTACCTGATACCCCCATTCATTCATCCTCTCCTTCCTGA
>Glyma17g07920.1 sequence type=predicted peptide gene model=Glyma17g07920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGKCSYSIKQGFRTTRLFHRRSKLISPVIWSLHRQPLPHDPHPLDDASDPALKALPSYERQFRYHYHRGHVIYTGTMMKYEHCERLLREQMVQERAVEVARGNLDQYYRMINQNYGDFMKRYMQQCRMHSDLLVNFGKDIEKLRSIKLHPALQTANRKCLLDLVKEENLRKSVENCTSSHKQFENKVSQFKQTFGEVKRRAEELLSSRDFLPIKNLEQAIKEHQRYINEQKSIMQSLSKDVNTVKKLVDDCLSSQLSSSLRPHDAVSALGPMYDVHDKNHLPKMQACDRAISKLLEFCKENKNEMNLFVHNYMQNITYVSYLIKDQKLQFPVFKEAMARQDGLFMDLKLFHGIGPAYRACLAEIVRRKASMKLYMGMAGQMAERLAIKREAELRRREEFLRLHSSCIPKEVLASMGLFDTPNQCDVNIAPFDGGLLNIDISDVERYAPEYLTGVTSKLDKQGSSKSSSALSSDSSHLAEAVDITGDSIERDDSEDLLDGSELLEIAGTCKMEVENAKLKAELAGRIALICSLCPELEYESLDDERVNNILRNAAEKTQEALHLKDEYIKHVQSMLKMKQMLCVSYEKRIQELEQKLSDQYVQGQKMSSVNDAADLPLVAGKTDNYKSESISGEANMPCISTSEPMDEVSCISSSLDAKLGLFMFTEHTGKALDGVDENMLDSSGVQNPQLDSSMMEPHREEAQSGDKDKKGKIIVQLGMSLTNSSTGENMPVSHDLVPCDSAVCQDLESKVNDEKVLELQSALADKSNQLNETETKLKTVMEKVAVLRRELEASQKLLDESQMNCAHLENCLHEAREEAQTQKSSADRRASEYSLLRASVIKTRSFFERLKTCVYSPGGVAGFADSLRNLAQSLANSANDRDDDDIAEFRKCIRVLADRVGFLSKHREELHEKNTRTEAANEQLRKELEEKIDQVKTYYNKHQLEKQANKEKICFGCLEVHEIAAFVLTSAGHYEAITRNCSNYYLSDESVALFADHLPTRPNYIVGQIVHIERQIVKTLPPRPEHGRADKFTPDKGADWLTLNSGSTPNPYGLPVGCEYFLVTVAMLPDTPIHSSSPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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