Report for Sequence Feature Glyma17g07910
Feature Type: gene_model
Chromosome: Gm17
Start: 5840908
stop: 5845018
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g07910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G24100 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466
SoyBase E_val: 3.00E-132 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1MSZ7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSZ7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g07910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g07910
Paralog Evidence Comments
Glyma02g36810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g07910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g071300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g07910
Coding sequences of Glyma17g07910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g07910.1 sequence type=CDS gene model=Glyma17g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAACCGCTACAAGAAGAGCATGCTCCTCCCAACAAGCGCTTCAAATCTTCATCCGCTTCACAAGATGAGCAATGGAATGCTTCAAACGGTGCATCATCTTCCAGTTCTCCCTCCCAGTACAATATACTTGATGAGCCTAGCCCTCTGGGCTTACGTCTGAGGAAGAGCCCTTCGCTTTTAGATTTGATACAAATGAAGCTTTCTCAAGGGAATGTGATTATTGCAAATACACAAGATGAAAATTTTATAAGCTCTGGATTGAAAAAGGAGAGTCGGGGTGCTGCTGCATCAGGTTCTGTGGAGAAGCTTAAGGCTTCAAATTTCCCAGCTTCACTTTTAAGAATTGGTTCATGGGAGTATAAATCAAAACATGAGGGTGACTTAGTGGCAAAATGTTACTTCGCTAAACAGAAGCTTGTTTGGGAAGTTATTGAAGGTGAACTAAAGAGCAAAATGGAAATCCAATGGCCAGATATCATGGCACTTAAGGCAAATTGTCCTGATACTGGACCTAGCTCGTTGACTGTAGTGCTCGCTAGACAACCTCTTTTCTTCAAGGAGACTAATCCTCAGCCTAGAAAGCATACACTATGGCAAGCAACATCAGATTTTACTGATGGAGCGGCTTGCAAACACAGGCAGCATTTCTTGGAATTTCCACAAGGGTTGTTGGCCAAGCATTTTGAAAAGCTTATCCAATGTGACGCACGTCTTAATTTCTTAAGCCAACAACCGGAGATAATCTTGGATTCACCTCATTTTGATACACAGCCTGCTGCTTTTGAGAACCTTGACAATCCAGAAGATCGTGATTTGCATCTAGTCAACGGTAGTAGAAGTTCTGAAACTGATTTCAAGGGACCAAGAAACTTGGATCAGATAAAATTGCCTGGACTCCAGCCCTCTATGTCAGTGAGTGATTTTATTGGCCACATTGAACATTGCCTTTCCGAACAAATAACTTCCGGAAATCCATCCTTTTGTGGTGGAAGATCAGAGTTACAGGAAATGCTGGAGGAAATTGCACAGCATCTTCTTAATGACAATCAGGTTATAACAACTTCTGATGAAATATCACTCATGACAAGGGTCAATTCTCTCTGCTGTCTTCTACAGAAGGACCCTGCAGGATTGCAGAGTTCACATGACAAGGAAAGTGCTGTTGCTGAAGGACCTGATGATGAAAAACGTATTCAACTTAGCCATGATCTTGAATCAATGCAGAACAACAAAATTAAAATGGATGTCAAGCCTGCTGAAGAGGACTTCAGAGATGCTTCTGGGAGCAAGCAAACACTAGGCATGTCCAGGAAAGACTCTTTTGCAGAGTTGCTTCATCAACTTCCTCGAATTGCATCACTTTCGAAGTTCTTGTTTGACATATCAGAAGAAGATAGCGACAGCTAA
Predicted protein sequences of Glyma17g07910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g07910.1 sequence type=predicted peptide gene model=Glyma17g07910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEPLQEEHAPPNKRFKSSSASQDEQWNASNGASSSSSPSQYNILDEPSPLGLRLRKSPSLLDLIQMKLSQGNVIIANTQDENFISSGLKKESRGAAASGSVEKLKASNFPASLLRIGSWEYKSKHEGDLVAKCYFAKQKLVWEVIEGELKSKMEIQWPDIMALKANCPDTGPSSLTVVLARQPLFFKETNPQPRKHTLWQATSDFTDGAACKHRQHFLEFPQGLLAKHFEKLIQCDARLNFLSQQPEIILDSPHFDTQPAAFENLDNPEDRDLHLVNGSRSSETDFKGPRNLDQIKLPGLQPSMSVSDFIGHIEHCLSEQITSGNPSFCGGRSELQEMLEEIAQHLLNDNQVITTSDEISLMTRVNSLCCLLQKDPAGLQSSHDKESAVAEGPDDEKRIQLSHDLESMQNNKIKMDVKPAEEDFRDASGSKQTLGMSRKDSFAELLHQLPRIASLSKFLFDISEEDSDS*