Glyma17g07860 - SoyBase

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Report for Sequence Feature Glyma17g07860

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5813287
stop:	5816380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16060	AT	Annotation by Michelle Graham. TAIR10: ARIA-interacting double AP2 domain protein \| chr1:5508563-5511609 FORWARD LENGTH=345	SoyBase	E_val: 6.00E-104	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010187	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination	SoyBase	N/A	ISS
GO:0040008	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7JFH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Medicago truncatula RepID=G7JFH5_MEDTR	SoyBase	E_val: 6.00E-166	ISS
UniRef100_UPI000233E3BF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E3BF related cluster n=1 Tax=unknown RepID=UPI000233E3BF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07860

Paralog	Evidence	Comments
Glyma02g36880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g070800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07860

Limit To All Plant Sequences

>Glyma17g07860.1   sequence type=CDS   gene model=Glyma17g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAAAATCACAGCTGCGTACCCAGAAAAACAATGTTACCACCAATGACGATAATAATCTTAACGTAACCAACACTGTGACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACAGGCCGATACGAAGCTCATTTGTGGGACAAACATTGCTGGAATGAATCACAGAACAAAAAAGGGCGACAAGTCTACCTTGGCGCTTATGACAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAATTTCTAAATACAGAGGTGTTGCAAGGCATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTACCTCGGAACTTATGCTACCCAAGAAGAAGCTGCTACTGCCTATGACCTGGCAGCCATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCTAACAACAACACCAACAACGTTATCGACGACCAGATTAGTATTAATCTCACTAACATAAACAATAATAATAATTGCACTAACAGCTTCACCCCAAGTCCTGATCAAGAACAAGAAGCTAGCTTCTTCCACAACAAAGATTCACTCAATAATACTATTGTAGAAGAAGTCACGTTGGTGCCACATCAGCCTCGTCCAGCGAGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATCTTTCATCAACACAGATGGAATCTGAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACGTACTTTGAGTATGAAGATTCCAATAGATATGAGGAAGGAGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCAATGTGACGAGTTCGAGAGTTGA

Predicted protein sequences of Glyma17g07860

Limit To All Plant Sequences

>Glyma17g07860.1   sequence type=predicted peptide   gene model=Glyma17g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKSQLRTQKNNVTTNDDNNLNVTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNVIDDQISINLTNINNNNNCTNSFTPSPDQEQEASFFHNKDSLNNTIVEEVTLVPHQPRPASATSALELLLQSSKFKEMMEMTSVANLSSTQMESELPQCTFPDHIQTYFEYEDSNRYEEGDDLMFKFNEFSSIVPFYQCDEFES*

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