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Report for Sequence Feature Glyma17g07850

Feature Type:gene_model
Chromosome:Gm17
Start:5807399
stop:5808872
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g07850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23970AT Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251 SoyBaseE_val: 4.00E-91ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
KOG3179 KOG Predicted glutamine synthetase JGI ISS
PTHR11922Panther GMP SYNTHASE-RELATED JGI ISS
PTHR11922:SF11Panther SUBFAMILY NOT NAMED JGI ISS
PF00117PFAM Glutamine amidotransferase class-I JGI ISS
UniRef100_B9SQW3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase [glutamine-hydrolyzing] subunit A, putative n=1 Tax=Ricinus communis RepID=B9SQW3_RICCO SoyBaseE_val: 2.00E-113ISS
UniRef100_I1MSY9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MSY9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g07850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g07850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g070700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g07850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g07850
>Glyma17g07850.1   sequence type=CDS   gene model=Glyma17g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAACTGAAGGTGAAATTAGTAGTAGAAGATATGCTCTTCTGCTAGCAGTGAATGATTCTGAGTATGTAAAGAAAGCATATGGTGGCTACTATAACGTCTATGTAGAAGCCTTTGGGGAAGAAGGAGATACGTGGGATTTGTTTAGAGTCTACGACGGGGATTTCCCTGACTTCAGTGACCTCAATAAATACCATGGGTTTGTGATCACTGGTAGCCCCAGTGATGCCTATGGAAATGATTACTGGATCCTTAAACTCTGTTTCATGTTGCAAACTCTTGATGCCATGCAGAAAAAAGTCCTTGGCATTTGCTTTGGTCACCAGGTACTATGCAGGGCTTTGGGTGGAAGGGTTTGTAAATCGAACACAGGTTGGGATGTTGGCTTTAGACAAGTGCATTTCATGAAAGATCTAACTCGATCTTATAGGTACCTAGCGGAACATGAAATGATGACAGAATCGCTTTCCATCATTGAGGTACACCAAGATGAGGTTTATGAGGTTCCTCTGGGTGCAGAAGTGATTGCATCGTCAGACAAAACTAGAGTGGAAATGTTTGCGATTTCAGACCACATTCTTGGAATTCAGGGTCATCCTGAGTATAGCAGAGATATACTGTTTAATCTGATTGGTCGGCTGCAGAATATGAATGTCATAGAGGGAGGATTAGCTGAAGATTTGAAGTGTCGATTTCAGTCAGCTGAGGCAGACAAGAAGTGCTGGGGGAAAATATGCCGAAACTTTCTCGGGGGAAAATAA
Predicted protein sequences of Glyma17g07850
>Glyma17g07850.1   sequence type=predicted peptide   gene model=Glyma17g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTEGEISSRRYALLLAVNDSEYVKKAYGGYYNVYVEAFGEEGDTWDLFRVYDGDFPDFSDLNKYHGFVITGSPSDAYGNDYWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGRVCKSNTGWDVGFRQVHFMKDLTRSYRYLAEHEMMTESLSIIEVHQDEVYEVPLGAEVIASSDKTRVEMFAISDHILGIQGHPEYSRDILFNLIGRLQNMNVIEGGLAEDLKCRFQSAEADKKCWGKICRNFLGGK*






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