Report for Sequence Feature Glyma17g07850
Feature Type: gene_model
Chromosome: Gm17
Start: 5807399
stop: 5808872
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g07850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G23970 AT
Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251
SoyBase E_val: 4.00E-91 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG3179
KOG
Predicted glutamine synthetase
JGI ISS
PTHR11922 Panther
GMP SYNTHASE-RELATED
JGI ISS
PTHR11922:SF11 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00117 PFAM
Glutamine amidotransferase class-I
JGI ISS
UniRef100_B9SQW3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase [glutamine-hydrolyzing] subunit A, putative n=1 Tax=Ricinus communis RepID=B9SQW3_RICCO
SoyBase E_val: 2.00E-113 ISS
UniRef100_I1MSY9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MSY9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g07850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma17g07850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g070700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g07850
Coding sequences of Glyma17g07850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g07850.1 sequence type=CDS gene model=Glyma17g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTAACTGAAGGTGAAATTAGTAGTAGAAGATATGCTCTTCTGCTAGCAGTGAATGATTCTGAGTATGTAAAGAAAGCATATGGTGGCTACTATAACGTCTATGTAGAAGCCTTTGGGGAAGAAGGAGATACGTGGGATTTGTTTAGAGTCTACGACGGGGATTTCCCTGACTTCAGTGACCTCAATAAATACCATGGGTTTGTGATCACTGGTAGCCCCAGTGATGCCTATGGAAATGATTACTGGATCCTTAAACTCTGTTTCATGTTGCAAACTCTTGATGCCATGCAGAAAAAAGTCCTTGGCATTTGCTTTGGTCACCAGGTACTATGCAGGGCTTTGGGTGGAAGGGTTTGTAAATCGAACACAGGTTGGGATGTTGGCTTTAGACAAGTGCATTTCATGAAAGATCTAACTCGATCTTATAGGTACCTAGCGGAACATGAAATGATGACAGAATCGCTTTCCATCATTGAGGTACACCAAGATGAGGTTTATGAGGTTCCTCTGGGTGCAGAAGTGATTGCATCGTCAGACAAAACTAGAGTGGAAATGTTTGCGATTTCAGACCACATTCTTGGAATTCAGGGTCATCCTGAGTATAGCAGAGATATACTGTTTAATCTGATTGGTCGGCTGCAGAATATGAATGTCATAGAGGGAGGATTAGCTGAAGATTTGAAGTGTCGATTTCAGTCAGCTGAGGCAGACAAGAAGTGCTGGGGGAAAATATGCCGAAACTTTCTCGGGGGAAAATAA
Predicted protein sequences of Glyma17g07850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g07850.1 sequence type=predicted peptide gene model=Glyma17g07850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVTEGEISSRRYALLLAVNDSEYVKKAYGGYYNVYVEAFGEEGDTWDLFRVYDGDFPDFSDLNKYHGFVITGSPSDAYGNDYWILKLCFMLQTLDAMQKKVLGICFGHQVLCRALGGRVCKSNTGWDVGFRQVHFMKDLTRSYRYLAEHEMMTESLSIIEVHQDEVYEVPLGAEVIASSDKTRVEMFAISDHILGIQGHPEYSRDILFNLIGRLQNMNVIEGGLAEDLKCRFQSAEADKKCWGKICRNFLGGK*