Report for Sequence Feature Glyma17g07810
Feature Type: gene_model
Chromosome: Gm17
Start: 5771055
stop: 5776604
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g07810
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G23950 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr2:10187204-10189969 REVERSE LENGTH=634
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0010075 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF423 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF08263 PFAM
Leucine rich repeat N-terminal domain
JGI ISS
UniRef100_E2IXG5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis receptor kinase-like protein 1 n=1 Tax=Medicago truncatula RepID=E2IXG5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233ED9E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233ED9E related cluster n=1 Tax=unknown RepID=UPI000233ED9E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g07810
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g07810
Paralog Evidence Comments
Glyma02g36940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g07810 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g070300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g07810
Coding sequences of Glyma17g07810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g07810.1 sequence type=CDS gene model=Glyma17g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCATGCCTCTCTCCTGTCTCCTCCTCCTCCTCCTCTTCTTCCTCTCACGCCACACTCTCTCTTCCGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATCAACATTAAAGGAGGTCTGAATGACCCTCACGGCGTCCTCAACAACTGGGATGAATACTCCGTCGACGCTTGCAGCTGGACCATGATCACTTGCTCTTCTGATTACCTTGTCATAGGCCTTGGAGCGCCTAGCCAATCTCTCTCCGGAACTTTATCTCCGGCTATCGAAAATCTAACAAATCTTCGACAAGTATTACTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAAACCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACCGTTTCTCGGGGCTCATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACTTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGTGTCACTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGAAGCAGCACTACTGAAGGTTGCTCTGGCTCAGCAACCCTCATGCCCATCTCTTTCTCGCAAGTGTCATCAGAAGGAAAACACAAGTCCAAAAGACTAGCAATAGCTTTTGGGGTCAGTCTTGGTTGTGCTTCTCTCATCCTTCTGCTTTTTGGGCTATTGTGGTATAGAAAGAAACGACAGCACGGAGTCATCCTTTATATCAGTGATTATAAGGAAGAGGGAGTTCTTAGCTTGGGAAATCTAAAAAAATTCACTTTCAGAGAGCTCCTACATGCCACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATAGGGGGAAGCTTGGAGATGGCACAATGGTGGCGGTGAAAAGGCTGAAAGATGTAAATGGTAGTGCTGGTGAATCACAGTTCCAAACTGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTTCTAGTGAGAAACTTTTGGTTTATCCTTATATGTCTAATGGTAGTGTGGCCTCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGTCTTCTGTATTTGCACGAGCAATGTGATCCAAAGATAATACACAGAGATGTTAAGGCTGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCTCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCAGAGTACCTTTCCACCGGCCAATCATCTGAGAAAACAGATGTCTTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAATGGGTTAGGAAAATACTACATGAAAAGAGGGTTGCAGTGTTGGTGGACAAAGAGCTTGGAGACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCCGAAGTGGTTCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCAAGACATGAACTCCAGTCACAGTCACAGCAACAGCAACAATAGCAATACTTCATCCCGCCCTACCTCTGCTTCCAAACATGATGATGATGTTAATGACCGTTCCAGCATGCTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA
Predicted protein sequences of Glyma17g07810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g07810.1 sequence type=predicted peptide gene model=Glyma17g07810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIMPLSCLLLLLLFFLSRHTLSSASQPRNPEVEALINIKGGLNDPHGVLNNWDEYSVDACSWTMITCSSDYLVIGLGAPSQSLSGTLSPAIENLTNLRQVLLQNNNISGNIPPELGNLPKLQTLDLSNNRFSGLIPASLSQLNSLQYLRLNNNNLSGSFPVSLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLMPISFSQVSSEGKHKSKRLAIAFGVSLGCASLILLLFGLLWYRKKRQHGVILYISDYKEEGVLSLGNLKKFTFRELLHATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATSSEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKRVAVLVDKELGDNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNQDMNSSHSHSNSNNSNTSSRPTSASKHDDDVNDRSSMLGMTMDDDDEQSLESYAMELSGPR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
