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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30490 | AT | Annotation by Michelle Graham. TAIR10: AFG1-like ATPase family protein | chr4:14899226-14901883 REVERSE LENGTH=497 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| KOG2383 | KOG | Predicted ATPase | JGI | ISS | |
| PTHR12169 | Panther | ATPASE N2B | JGI | ISS | |
| PF03969 | PFAM | AFG1-like ATPase | JGI | ISS | |
| UniRef100_Q8L517 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AFG1-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8L517_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E3BD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E3BD related cluster n=1 Tax=unknown RepID=UPI000233E3BD | SoyBase | E_val: 0 | ISS |
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Glyma17g07771 not represented in the dataset |
Glyma17g07771 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g36990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g069900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07771.2 sequence type=transcript gene model=Glyma17g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTCCATCGCATGTGAATATTGATCCCACACTTGATGAACATAATTAGTTGAGTTGAGACATTTAATAAACAAAAAATAATAATAAAGTCGACGCATTACGCATAGGCCATAAATGTTTTGTTCCAGGTTTTGAGTTAGTTGCATCGCCAGCATCTTTTTTCTCCTTTTTTAAAGGTGCAAGCAAACGTGTGAGTTTCTGGCTCAAGAAAAAAAAAAAAAACGTGGAATCCAAACGGGCTAAGGTGAAACACCAGCGCTGTTAAGTGTGAACAAAGTGGGCTCTGTTTTGTGGGAGTGCTCACCTATTCAGGTGAGTTTTCTTTTTGTTTTTTTTCATCCTGTTGCTAATATAACTCCGTCGAGATTATTTTTTTGTCCCTTTTCCGCAATTTTCCTAACATGTTGGAACGAATTGGAAATACGGCGTTTTTATCTGGACTTAGGATTCTTGAAAAAAAAAATTTGGGGTTTATTGGTCTGAAGCTTGTTGGAGTTGGGAGTAGTTGAAGATGAGAAACGTGCTTCGTTCTTTGCGACAATTGCGACCAGCCTTTCAGAGGCAAGATTGTGTTTTGATCATTGTTAATGTTGCAGAAGAACCTCCATGTCACATTGGAAAGAGCTGTCATATTCATTCTTCAGCTTTTAGATTTGTTGATCATGCTGAGACCAACTTTAAAAACCATTTGTTTACAACAACCACGAGACCTCTCTCAACTGATGCCGCAAAACTTACAAATAGAGAAACAAGCAAAGCTGGGCCTCTTGTTGAGTATGAACGAAGGATTACTAATGGTGAACTTGTAGAAGGTGATGCTTGCCAGGTAGACACTCTGACAGAACTTCAGAGACTGTATGATGAGCTTGTTGAGTCTGCTGACATCTGCCAATTGGATCGGAACTCTGAAAAACCTGTAAGGAGTGGGTGGCTGTGGTCTCGTCTCTTGTCTCATCCCTCTTACTCACCTGTAAAAGGTTTATATCTTTATGGAGGAGTGGGTACCGGTAAAACTATGCTGATGGACCTGTTTTTTTATCAATTGCCTTCTAATTGGAGGAAAAAGAGGATTCATTTTCATGACTTTATGTTGAATGTACATAGCATGCTACAAAAGCATAAGGGGTTGTCAGATCCACTTGATGTGGTTGCAGGAGAGATTTCTGATGATGCAATTTTATTATGTCTTGACGAATTTATGGTAACAGATGTAGCAGATGCATTGGTACTAAATCGCTTGTTTAGACATTTGTTCAACAAAGGCATTATTCTAGTGGCCACATCAAATCGTGCTCCAGATAACCTATATGAGGGTGGATTGCAGAGGGATCTCTTTCTACCCTTCATTGCAGCATTGAAGGAAAGATGTGTAGTACATGAGATTGGTTCATCAATTGACTACCGCAAAATGACATCGGGTGAGCAAGGATTCTATTTGGTTGGCACTGATTTATCTGGCTTTCTTAAGGAGAAGTTTCAACAGTTGATTGGAGAAGGAACAGCTACTCCTACTCCCCAAGAAGTAGAAGTAGTAATGGGAAGGACACTGCATGTTCCATTGGGAGCTAACGGATGTGCCTATTTTCCTTTTGAGGAAATTTGTGATAGACCTCTTGGGGCTGCAGACTATTTTGGGTTATTCAAGAAGTTTCATACGCTAGTCTTGGATGGCATTCCAATTTTTGGGCTTCACAATAAATCAGCTGCACATAGGTTTGTCACTTTAGTTGATGTGATGTATGAGAACAAGGCCAGACTATTATGTACTGCCGAAGGGAGCCCTAAAGATCTCTTTGAAAAAATAGTAACAGTATCTGAGGCTAAAAATTTGGCACCCAGAACCTCTTCAAGATCACGGAAAAATGATGATTCTAACCTTTGTGTGGACAATGAATTGGGGTTTGCCAAAGACCGCACCATTAGTAGACTGACAGAAATTAACAGCAAGGAATACTTAGAGCATCATGCTGCCATGTTAGCAGAAAAGAAAGAAAGAGTGGATCAGAATGCCGTTGAAGCTTGAAGAAAGGATCCAAAACCTCTTATCACAGTTTGGTGGCTATTGTTGTGGCATAGTGAAAGTGGAGTAAAATGAATAGTTATTGTGAACAACCAAAAATTTCAAATTAGAAAACATCCATCGGCAGAGCATTAGATTTGGCTCAGTTTGCTTCCTATTATTGTACACCATATATAGAGTGAAAGTGGGGTAAAATGAATAATGATTGTGAACGACCAAAATTTCAAATAAAAAACATCCATCTTCGGAGCATTAGATTTGGCACCAGCTCAGGGAGAGGTGGGTTAGATAGCATCAAATAGTTATTAGCATTTCCAAAAATATTGTGTAATTGATTGATTTAATGCAAAAATTCAAACAATTTAAATTGAATGTAGGTCTTTTAAACTACATTTATTGTTGATTAATGTATAGCAAGTCTTGATCATTACATTCAGAGGCCTGATAAATATATTCATCTCGCCAAAGTAGAAATGAATCAAATTCATTGAAAGGTTTCATAATACT
>Glyma17g07771.1 sequence type=CDS gene model=Glyma17g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAACGTGCTTCGTTCTTTGCGACAATTGCGACCAGCCTTTCAGAGGCAAGATTGTGTTTTGATCATTGTTAATGTTGCAGAAGAACCTCCATGTCACATTGGAAAGAGCTGTCATATTCATTCTTCAGCTTTTAGATTTGTTGATCATGCTGAGACCAACTTTAAAAACCATTTGTTTACAACAACCACGAGACCTCTCTCAACTGATGCCGCAAAACTTACAAATAGAGAAACAAGCAAAGCTGGGCCTCTTGTTGAGTATGAACGAAGGATTACTAATGGTGAACTTGTAGAAGGTGATGCTTGCCAGGTAGACACTCTGACAGAACTTCAGAGACTGTATGATGAGCTTGTTGAGTCTGCTGACATCTGCCAATTGGATCGGAACTCTGAAAAACCTGTAAGGAGTGGGTGGCTGTGGTCTCGTCTCTTGTCTCATCCCTCTTACTCACCTGTAAAAGGTTTATATCTTTATGGAGGAGTGGGTACCGGTAAAACTATGCTGATGGACCTGTTTTTTTATCAATTGCCTTCTAATTGGAGGAAAAAGAGGATTCATTTTCATGACTTTATGTTGAATGTACATAGCATGCTACAAAAGCATAAGGGGTTGTCAGATCCACTTGATGTGGTTGCAGGAGAGATTTCTGATGATGCAATTTTATTATGTCTTGACGAATTTATGGTAACAGATGTAGCAGATGCATTGGTACTAAATCGCTTGTTTAGACATTTGTTCAACAAAGGCATTATTCTAGTGGCCACATCAAATCGTGCTCCAGATAACCTATATGAGGGTGGATTGCAGAGGGATCTCTTTCTACCCTTCATTGCAGCATTGAAGGAAAGATGTGTAGTACATGAGATTGGTTCATCAATTGACTACCGCAAAATGACATCGGGTGAGCAAGGATTCTATTTGGTTGGCACTGATTTATCTGGCTTTCTTAAGGAGAAGTTTCAACAGTTGATTGGAGAAGGAACAGCTACTCCTACTCCCCAAGAAGTAGAAGTAGTAATGGGAAGGACACTGCATGTTCCATTGGGAGCTAACGGATGTGCCTATTTTCCTTTTGAGGAAATTTGTGATAGACCTCTTGGGGCTGCAGACTATTTTGGGTTATTCAAGAAGTTTCATACGCTAGTCTTGGATGGCATTCCAATTTTTGGGCTTCACAATAAATCAGCTGCACATAGGTTTGTCACTTTAGTTGATGTGATGTATGAGAACAAGGCCAGACTATTATGTACTGCCGAAGGGAGCCCTAAAGATCTCTTTGAAAAAATAGTAACAGTATCTGAGGCTAAAAATTTGGCACCCAGAACCTCTTCAAGATCACGGAAAAATGATGATTCTAACCTTTGTGTGGACAATGAATTGGGGTTTGCCAAAGACCGCACCATTAGTAGACTGACAGAAATTAACAGCAAGGAATACTTAGAGCATCATGCTGCCATGTTAGCAGAAAAGAAAGAAAGAGTGGATCAGAATGCCGTTGAAGCTTGA >Glyma17g07771.2 sequence type=CDS gene model=Glyma17g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAACGTGCTTCGTTCTTTGCGACAATTGCGACCAGCCTTTCAGAGGCAAGATTGTGTTTTGATCATTGTTAATGTTGCAGAAGAACCTCCATGTCACATTGGAAAGAGCTGTCATATTCATTCTTCAGCTTTTAGATTTGTTGATCATGCTGAGACCAACTTTAAAAACCATTTGTTTACAACAACCACGAGACCTCTCTCAACTGATGCCGCAAAACTTACAAATAGAGAAACAAGCAAAGCTGGGCCTCTTGTTGAGTATGAACGAAGGATTACTAATGGTGAACTTGTAGAAGGTGATGCTTGCCAGGTAGACACTCTGACAGAACTTCAGAGACTGTATGATGAGCTTGTTGAGTCTGCTGACATCTGCCAATTGGATCGGAACTCTGAAAAACCTGTAAGGAGTGGGTGGCTGTGGTCTCGTCTCTTGTCTCATCCCTCTTACTCACCTGTAAAAGGTTTATATCTTTATGGAGGAGTGGGTACCGGTAAAACTATGCTGATGGACCTGTTTTTTTATCAATTGCCTTCTAATTGGAGGAAAAAGAGGATTCATTTTCATGACTTTATGTTGAATGTACATAGCATGCTACAAAAGCATAAGGGGTTGTCAGATCCACTTGATGTGGTTGCAGGAGAGATTTCTGATGATGCAATTTTATTATGTCTTGACGAATTTATGGTAACAGATGTAGCAGATGCATTGGTACTAAATCGCTTGTTTAGACATTTGTTCAACAAAGGCATTATTCTAGTGGCCACATCAAATCGTGCTCCAGATAACCTATATGAGGGTGGATTGCAGAGGGATCTCTTTCTACCCTTCATTGCAGCATTGAAGGAAAGATGTGTAGTACATGAGATTGGTTCATCAATTGACTACCGCAAAATGACATCGGGTGAGCAAGGATTCTATTTGGTTGGCACTGATTTATCTGGCTTTCTTAAGGAGAAGTTTCAACAGTTGATTGGAGAAGGAACAGCTACTCCTACTCCCCAAGAAGTAGAAGTAGTAATGGGAAGGACACTGCATGTTCCATTGGGAGCTAACGGATGTGCCTATTTTCCTTTTGAGGAAATTTGTGATAGACCTCTTGGGGCTGCAGACTATTTTGGGTTATTCAAGAAGTTTCATACGCTAGTCTTGGATGGCATTCCAATTTTTGGGCTTCACAATAAATCAGCTGCACATAGGTTTGTCACTTTAGTTGATGTGATGTATGAGAACAAGGCCAGACTATTATGTACTGCCGAAGGGAGCCCTAAAGATCTCTTTGAAAAAATAGTAACAGTATCTGAGGCTAAAAATTTGGCACCCAGAACCTCTTCAAGATCACGGAAAAATGATGATTCTAACCTTTGTGTGGACAATGAATTGGGGTTTGCCAAAGACCGCACCATTAGTAGACTGACAGAAATTAACAGCAAGGAATACTTAGAGCATCATGCTGCCATGTTAGCAGAAAAGAAAGAAAGAGTGGATCAGAATGCCGTTGAAGCTTGA
>Glyma17g07771.1 sequence type=predicted peptide gene model=Glyma17g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNVLRSLRQLRPAFQRQDCVLIIVNVAEEPPCHIGKSCHIHSSAFRFVDHAETNFKNHLFTTTTRPLSTDAAKLTNRETSKAGPLVEYERRITNGELVEGDACQVDTLTELQRLYDELVESADICQLDRNSEKPVRSGWLWSRLLSHPSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPSNWRKKRIHFHDFMLNVHSMLQKHKGLSDPLDVVAGEISDDAILLCLDEFMVTDVADALVLNRLFRHLFNKGIILVATSNRAPDNLYEGGLQRDLFLPFIAALKERCVVHEIGSSIDYRKMTSGEQGFYLVGTDLSGFLKEKFQQLIGEGTATPTPQEVEVVMGRTLHVPLGANGCAYFPFEEICDRPLGAADYFGLFKKFHTLVLDGIPIFGLHNKSAAHRFVTLVDVMYENKARLLCTAEGSPKDLFEKIVTVSEAKNLAPRTSSRSRKNDDSNLCVDNELGFAKDRTISRLTEINSKEYLEHHAAMLAEKKERVDQNAVEA* >Glyma17g07771.2 sequence type=predicted peptide gene model=Glyma17g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNVLRSLRQLRPAFQRQDCVLIIVNVAEEPPCHIGKSCHIHSSAFRFVDHAETNFKNHLFTTTTRPLSTDAAKLTNRETSKAGPLVEYERRITNGELVEGDACQVDTLTELQRLYDELVESADICQLDRNSEKPVRSGWLWSRLLSHPSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPSNWRKKRIHFHDFMLNVHSMLQKHKGLSDPLDVVAGEISDDAILLCLDEFMVTDVADALVLNRLFRHLFNKGIILVATSNRAPDNLYEGGLQRDLFLPFIAALKERCVVHEIGSSIDYRKMTSGEQGFYLVGTDLSGFLKEKFQQLIGEGTATPTPQEVEVVMGRTLHVPLGANGCAYFPFEEICDRPLGAADYFGLFKKFHTLVLDGIPIFGLHNKSAAHRFVTLVDVMYENKARLLCTAEGSPKDLFEKIVTVSEAKNLAPRTSSRSRKNDDSNLCVDNELGFAKDRTISRLTEINSKEYLEHHAAMLAEKKERVDQNAVEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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