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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23890 | AT | Annotation by Michelle Graham. TAIR10: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008253 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-nucleotidase activity | SoyBase | N/A | ISS |
| KOG2470 | KOG | Similar to IMP-GMP specific 5'-nucleotidase | JGI | ISS | |
| PTHR12103 | Panther | CYTOSOLIC PURINE 5-NUCLEOTIDASE-RELATED | JGI | ISS | |
| PTHR12103:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05761 | PFAM | 5' nucleotidase family | JGI | ISS | |
| UniRef100_B9S3L3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytosolic purine 5-nucleotidase, putative n=1 Tax=Ricinus communis RepID=B9S3L3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ED9C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ED9C related cluster n=1 Tax=unknown RepID=UPI000233ED9C | SoyBase | E_val: 0 | ISS |
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Glyma17g07760 not represented in the dataset |
Glyma17g07760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g069800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07760.4 sequence type=transcript gene model=Glyma17g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAAATATAAAAAAATTTACAACAATTCACACGCTTTCTTCACCAATTCAGCTTCCATGGTTGATTTCACTCCGTCCGTATACATTTTAAGAAAGTCTAGCCAAATTGTTGTAAATATGTGAGTTGAACTGTTATGAATGAAAAAATAAATTCGGTCTATACACAGAGTTGAGTCATGAGTGTATAACATCATTTTTCTACTTAGATTTCTTAGCTGGTCCACAAAAACTAAAATTCGTTGGGAAAGGCCGCGTAAAAGCAAGGTTGCTTTCCCCGCAGTTTGAGGCCACACACAAAAACTCAATCGTAAAGCCATTTCACTTCAACTTTGCATTGCACGTAAATCTCAATCCAAATCAAATGGCCTCCCTTCGTATTCGTAACCTTCTCCGTTTCTCCATACACGGGACGCTGCTTTCATCTTCTCCACTTCGACCAGTGTAGGGTTTTCGGGAAGCTCTCGAAGCTACAGCGTCGTTGAATCTTCGAAACATTTTCTATTGAAGTCCGACGATGAGGAGATATTCGCTCTCCGTCGCAAATTCGAAGCTGCCAAACAGAGTTTTCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGAACGGTTCTCGAAATCATTCAAACTATTAGTGGCATTCCGCAGTTCTAATAACGGAGTAATGATGAGCTGCAACTGGAAGACAATTGTTGCAGTAGTAACGTGCATTCAATTTTATTCTTGTCATTGATTCCCTCATTTCATCTCGACATAGCTAACTTTATCTGGTATGCTTCAATTAATAGAGAAAGAAATTAGAAAAATGAAAGCCTTCTAATCATGTATATCAATTTTTCATAAATTGGATATTTGTTGCTATGCTGTCTAACAATGAATATTTATTTATATTTTAAATAATATATTACCTATCAAGATAAAATAGTGCGAT
>Glyma17g07760.3 sequence type=CDS gene model=Glyma17g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCCTTCGTATTCGTAACCTTCTCCGTTTCTCCATACACGGGACGCTGCTTTCATCTTCTCCACTTCGACCAGGGTTTTCGGGAAGCTCTCGAAGCTACAGCGTCGTTGAATCTTCGAAACATTTTCTATTGAAGTCCGACGATGAGGAGATATTCGCTCTCCGTCGCAAATTCGAAGCTGCCAAACAGAGTTTTCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGA >Glyma17g07760.4 sequence type=CDS gene model=Glyma17g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGA
>Glyma17g07760.3 sequence type=predicted peptide gene model=Glyma17g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLRIRNLLRFSIHGTLLSSSPLRPGFSGSSRSYSVVESSKHFLLKSDDEEIFALRRKFEAAKQSFLSIPDALREMPKMNPKGIYVNKNVRLDQLQVYGFDYDYTLAHYSSDLQTLIYDLAKEYLVNELRYPEVCTSFKYDPTFPIRGLYYDKSKGCLMKLDFFGSIEPDGCFFGRRRLSHTEIRDIYGTRHIGRDHARSLVGLMDFFCFSEACLLADIVQYFVDAKLEFDASYIYEDVIRAIDHVHRSGLVHRGILSDPHRYLVKNGKILRYLKMLRERGKKLFLLTNSPYYFVDGGMRFMLEDSLDCRDSWTELFDVVIAKANKPQFYTSEHPFRCYDTKNDTLTFTKVDEFLPDKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIQIQNEDTYRSEQAKLHIIQELLGKLHATASSSSRTTAFNSLLEELNEERQKARSKMKMMFNRSFGATFLASTGQESAFAYNIHQYADVYTSKPENFLLHSPEAWLHVPFDVKIMPHHVKVPSSLFKTG* >Glyma17g07760.4 sequence type=predicted peptide gene model=Glyma17g07760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKMNPKGIYVNKNVRLDQLQVYGFDYDYTLAHYSSDLQTLIYDLAKEYLVNELRYPEVCTSFKYDPTFPIRGLYYDKSKGCLMKLDFFGSIEPDGCFFGRRRLSHTEIRDIYGTRHIGRDHARSLVGLMDFFCFSEACLLADIVQYFVDAKLEFDASYIYEDVIRAIDHVHRSGLVHRGILSDPHRYLVKNGKILRYLKMLRERGKKLFLLTNSPYYFVDGGMRFMLEDSLDCRDSWTELFDVVIAKANKPQFYTSEHPFRCYDTKNDTLTFTKVDEFLPDKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIQIQNEDTYRSEQAKLHIIQELLGKLHATASSSSRTTAFNSLLEELNEERQKARSKMKMMFNRSFGATFLASTGQESAFAYNIHQYADVYTSKPENFLLHSPEAWLHVPFDVKIMPHHVKVPSSLFKTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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