Glyma17g07760 - SoyBase

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Report for Sequence Feature Glyma17g07760

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5741327
stop:	5749383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23890	AT	Annotation by Michelle Graham. TAIR10: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase \| chr2:10170680-10173622 FORWARD LENGTH=553	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008253	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 5'-nucleotidase activity	SoyBase	N/A	ISS
KOG2470	KOG	Similar to IMP-GMP specific 5'-nucleotidase	JGI		ISS
PTHR12103	Panther	CYTOSOLIC PURINE 5-NUCLEOTIDASE-RELATED	JGI		ISS
PTHR12103:SF1	Panther	UNCHARACTERIZED	JGI		ISS
PF05761	PFAM	5' nucleotidase family	JGI		ISS
UniRef100_B9S3L3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytosolic purine 5-nucleotidase, putative n=1 Tax=Ricinus communis RepID=B9S3L3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ED9C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ED9C related cluster n=1 Tax=unknown RepID=UPI000233ED9C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g07760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g069800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g07760

Limit To All Plant Sequences

>Glyma17g07760.4   sequence type=transcript   gene model=Glyma17g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATATAAAAAAATTTACAACAATTCACACGCTTTCTTCACCAATTCAGCTTCCATGGTTGATTTCACTCCGTCCGTATACATTTTAAGAAAGTCTAGCCAAATTGTTGTAAATATGTGAGTTGAACTGTTATGAATGAAAAAATAAATTCGGTCTATACACAGAGTTGAGTCATGAGTGTATAACATCATTTTTCTACTTAGATTTCTTAGCTGGTCCACAAAAACTAAAATTCGTTGGGAAAGGCCGCGTAAAAGCAAGGTTGCTTTCCCCGCAGTTTGAGGCCACACACAAAAACTCAATCGTAAAGCCATTTCACTTCAACTTTGCATTGCACGTAAATCTCAATCCAAATCAAATGGCCTCCCTTCGTATTCGTAACCTTCTCCGTTTCTCCATACACGGGACGCTGCTTTCATCTTCTCCACTTCGACCAGTGTAGGGTTTTCGGGAAGCTCTCGAAGCTACAGCGTCGTTGAATCTTCGAAACATTTTCTATTGAAGTCCGACGATGAGGAGATATTCGCTCTCCGTCGCAAATTCGAAGCTGCCAAACAGAGTTTTCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGAACGGTTCTCGAAATCATTCAAACTATTAGTGGCATTCCGCAGTTCTAATAACGGAGTAATGATGAGCTGCAACTGGAAGACAATTGTTGCAGTAGTAACGTGCATTCAATTTTATTCTTGTCATTGATTCCCTCATTTCATCTCGACATAGCTAACTTTATCTGGTATGCTTCAATTAATAGAGAAAGAAATTAGAAAAATGAAAGCCTTCTAATCATGTATATCAATTTTTCATAAATTGGATATTTGTTGCTATGCTGTCTAACAATGAATATTTATTTATATTTTAAATAATATATTACCTATCAAGATAAAATAGTGCGAT

Coding sequences of Glyma17g07760

Limit To All Plant Sequences

>Glyma17g07760.3   sequence type=CDS   gene model=Glyma17g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCCTTCGTATTCGTAACCTTCTCCGTTTCTCCATACACGGGACGCTGCTTTCATCTTCTCCACTTCGACCAGGGTTTTCGGGAAGCTCTCGAAGCTACAGCGTCGTTGAATCTTCGAAACATTTTCTATTGAAGTCCGACGATGAGGAGATATTCGCTCTCCGTCGCAAATTCGAAGCTGCCAAACAGAGTTTTCTCAGTATTCCCGATGCGCTCCGGGAAATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGA

>Glyma17g07760.4   sequence type=CDS   gene model=Glyma17g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCAAAATGAATCCTAAAGGCATATATGTGAATAAGAACGTGAGATTGGACCAATTGCAAGTTTATGGGTTCGACTATGATTACACATTGGCGCATTACTCGTCTGATTTACAGACTTTGATATATGACCTTGCCAAGGAGTACTTGGTTAATGAGCTTAGGTATCCGGAGGTTTGCACGAGTTTTAAATATGATCCAACTTTCCCCATTAGAGGCCTATACTATGATAAGTCAAAAGGGTGCCTCATGAAGCTGGATTTCTTTGGTTCAATTGAGCCGGATGGATGCTTCTTTGGAAGACGCAGGCTAAGCCATACAGAAATACGTGACATATATGGCACGCGGCATATTGGTCGTGATCATGCTCGATCACTTGTTGGTTTGATGGATTTCTTCTGCTTCAGTGAGGCATGCCTTCTTGCAGATATAGTTCAGTACTTTGTTGATGCTAAGCTAGAATTTGATGCTTCCTACATTTATGAAGATGTTATTCGTGCAATTGACCATGTCCATCGAAGTGGCCTGGTTCATAGAGGAATTCTATCTGACCCACACAGATACTTAGTGAAAAATGGAAAGATATTACGTTATCTTAAGATGCTAAGGGAGCGGGGGAAGAAGCTTTTCCTGTTGACTAATTCTCCTTATTATTTTGTGGATGGAGGGATGCGTTTTATGTTGGAGGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCGTTGTTATGACACAAAGAATGACACATTAACTTTTACCAAGGTTGATGAATTTCTACCAGATAAAATTTATTATCATGGATGCCTCAAATCCTTTCTCCAAATAACCAAGTGGAATGGCCCAGAGGTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGAGCGAAATACAAATACAAAATGAAGATACCTACCGCTCTGAGCAGGCAAAGTTGCATATTATACAGGAACTACTTGGTAAATTGCATGCAACTGCATCTAGTAGTTCAAGAACTACAGCTTTCAATTCACTTCTTGAAGAACTTAATGAGGAGAGACAAAAAGCACGAAGCAAGATGAAGATGATGTTTAATAGATCTTTTGGAGCAACATTCCTGGCTAGCACAGGACAAGAATCTGCTTTCGCTTATAACATTCATCAGTATGCAGATGTTTATACCAGTAAGCCAGAGAATTTTCTTCTGCACTCACCTGAAGCATGGCTTCATGTTCCATTTGATGTCAAGATCATGCCTCATCATGTGAAGGTTCCATCAAGCTTGTTCAAAACCGGGTGA

Predicted protein sequences of Glyma17g07760

Limit To All Plant Sequences

>Glyma17g07760.3   sequence type=predicted peptide   gene model=Glyma17g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLRIRNLLRFSIHGTLLSSSPLRPGFSGSSRSYSVVESSKHFLLKSDDEEIFALRRKFEAAKQSFLSIPDALREMPKMNPKGIYVNKNVRLDQLQVYGFDYDYTLAHYSSDLQTLIYDLAKEYLVNELRYPEVCTSFKYDPTFPIRGLYYDKSKGCLMKLDFFGSIEPDGCFFGRRRLSHTEIRDIYGTRHIGRDHARSLVGLMDFFCFSEACLLADIVQYFVDAKLEFDASYIYEDVIRAIDHVHRSGLVHRGILSDPHRYLVKNGKILRYLKMLRERGKKLFLLTNSPYYFVDGGMRFMLEDSLDCRDSWTELFDVVIAKANKPQFYTSEHPFRCYDTKNDTLTFTKVDEFLPDKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIQIQNEDTYRSEQAKLHIIQELLGKLHATASSSSRTTAFNSLLEELNEERQKARSKMKMMFNRSFGATFLASTGQESAFAYNIHQYADVYTSKPENFLLHSPEAWLHVPFDVKIMPHHVKVPSSLFKTG*

>Glyma17g07760.4   sequence type=predicted peptide   gene model=Glyma17g07760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKMNPKGIYVNKNVRLDQLQVYGFDYDYTLAHYSSDLQTLIYDLAKEYLVNELRYPEVCTSFKYDPTFPIRGLYYDKSKGCLMKLDFFGSIEPDGCFFGRRRLSHTEIRDIYGTRHIGRDHARSLVGLMDFFCFSEACLLADIVQYFVDAKLEFDASYIYEDVIRAIDHVHRSGLVHRGILSDPHRYLVKNGKILRYLKMLRERGKKLFLLTNSPYYFVDGGMRFMLEDSLDCRDSWTELFDVVIAKANKPQFYTSEHPFRCYDTKNDTLTFTKVDEFLPDKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIQIQNEDTYRSEQAKLHIIQELLGKLHATASSSSRTTAFNSLLEELNEERQKARSKMKMMFNRSFGATFLASTGQESAFAYNIHQYADVYTSKPENFLLHSPEAWLHVPFDVKIMPHHVKVPSSLFKTG*

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