SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23820 | AT | Annotation by Michelle Graham. TAIR10: Metal-dependent phosphohydrolase | chr2:10140595-10142672 FORWARD LENGTH=257 | SoyBase | E_val: 5.00E-100 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG3197 | KOG | Predicted hydrolases of HD superfamily | JGI | ISS | |
| PTHR11845 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR11845:SF4 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01966 | PFAM | HD domain | JGI | ISS | |
| UniRef100_B6SZF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HDDC2 protein n=1 Tax=Zea mays RepID=B6SZF6_MAIZE | SoyBase | E_val: 3.00E-98 | ISS |
| UniRef100_I1JGU2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JGU2_SOYBN | SoyBase | E_val: 5.00E-159 | ISS |
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Glyma17g07750 not represented in the dataset |
Glyma17g07750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g37010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g069700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07750.2 sequence type=CDS gene model=Glyma17g07750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGATTCACTCTTCTTTCCCGTGCGCCTGCTCCTTTTCTTTCTACCGCCTTCCTTAAATTCAAATTCGTTGCACCTTCCGCAGCGACTTTCACTAGGGTTTCTCGCATGGCCGCTTCACCTTCTTCCGCGGCGCTTCGCGACGGCGCTCCTTTCGCTTCCTCCGCCATTGATTTCCTCTCTATCTGCCACCGCCTCAAGACAACAAAGCGAACAGGTTGGGTGCGAAAAGATGTTAAGAATCCAGAATCTATAGCCGATCATATGTATCGAATGAGTTTGATGGCTCTGGTTGCATCAGATGTCCCCGGTGTAGACCGAAACAAGTGCATTAAAATGGCTATTGTTCATGACATTGCAGAGGCAATTGTTGGGGACATAACTCCATTGGATGGAGTTTCTAAAGCAGAAAAGAATCAACGAGAACAGGCAGCACTAGATCATATGTGTAAAGTACTTGGAGGAGGATCTACAGCAATGGAAATAGCAGAGTTGTGGATGGAGTATGAAGCAAATTCTTCCCCAGAAGCTAAATTTGTCAAGGACCTTGACAAGGTGGAGATGATACTCCAAGCTTTGGAATATGAAGTTGAGCAGGGGAAGGATCTGGATGAATTTTTCTGGTCAACTGCTGGGAAGTTCCAAACTGAAACTGGCAAAGCCTGGGCATCAGAGATAGTATCGAGAAGGAAGAATAATAAATAA
>Glyma17g07750.2 sequence type=predicted peptide gene model=Glyma17g07750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRFTLLSRAPAPFLSTAFLKFKFVAPSAATFTRVSRMAASPSSAALRDGAPFASSAIDFLSICHRLKTTKRTGWVRKDVKNPESIADHMYRMSLMALVASDVPGVDRNKCIKMAIVHDIAEAIVGDITPLDGVSKAEKNQREQAALDHMCKVLGGGSTAMEIAELWMEYEANSSPEAKFVKDLDKVEMILQALEYEVEQGKDLDEFFWSTAGKFQTETGKAWASEIVSRRKNNK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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