SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23810 | AT | Annotation by Michelle Graham. TAIR10: tetraspanin8 | chr2:10135859-10137352 REVERSE LENGTH=273 | SoyBase | E_val: 6.00E-129 | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3882 | KOG | Tetraspanin family integral membrane protein | JGI | ISS | |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF137 | Panther | JGI | ISS | ||
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_H9BYX6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein n=1 Tax=Vitis quinquangularis RepID=H9BYX6_9ROSI | SoyBase | E_val: 1.00E-136 | ISS |
| UniRef100_UPI0001CAA65E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CAA65E related cluster n=1 Tax=unknown RepID=UPI0001CAA65E | SoyBase | E_val: 0 | ISS |
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Glyma17g07700 not represented in the dataset |
Glyma17g07700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g01580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g069300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07700.1 sequence type=CDS gene model=Glyma17g07700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCGGTTCAGCAACAATGTTATCGGACTCCTTAACTTCCTCACCTTCCTCTTGTCCATCCCGATCCTGGTGGCCGGAGTGTGGCTGAGCAAGCAAGGCGCCACCGAGTGCGAGCGGTGGCTGGAGAAGCCCGTCATCGCGCTCGGCGTCTTCCTCATGCTCGTCTCACTCGCCGGCCTCGTCGGCGCGTGCTGCCGCGTGTCGTGGCTCCTCTGGCTCTACCTCCTCGTCATGTTTGTCCTCATCGTTCTTCTCTTCGCCTTCACCATTTTCGCTTTCGTCGTTACCAACAAGGGCGCTGGTGAAGTTGTTTCTAATAGAGGGTATAAAGAGTATAGGCTTGGGGATTACTCGAATTGGCTGCAGAAGAAGGTTAATAACACTAAGACGTGGAACAGGATCAGTAGTTGCTTGCATTCTGGGAAAGTCTGCACTGAGTTTCAATCCAAGTTTCTAAACGACACCGTTACTCAGTTTTACACCGAGCACCTGTCCGCGCTTCAGTCTGGATGCTGTAAACCTGCAGAAGAATGCCTATTTACCTATGAGAATTCAACGAGCTGGACGAAGCCTGGAAATGTGACCAGTTACAACAATCCTGACTGTGATGCTTGGAATAACAATCAAACAGTTCTGTGCTTCAATTGCCAATCATGCAAGGCTGGCTTTCTGCAAAACTTCAAGACTGAATGGAAGAGGGTGGCTGTTGTTAACATCGTATTCCTTGTTCTTCTCATTATTGTATACTCCATAGGGTGCTGTGCATTCAGGAACAATAGGAGGGAAAATTGGAAGGGATATTCTCGTTAG
>Glyma17g07700.1 sequence type=predicted peptide gene model=Glyma17g07700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVRFSNNVIGLLNFLTFLLSIPILVAGVWLSKQGATECERWLEKPVIALGVFLMLVSLAGLVGACCRVSWLLWLYLLVMFVLIVLLFAFTIFAFVVTNKGAGEVVSNRGYKEYRLGDYSNWLQKKVNNTKTWNRISSCLHSGKVCTEFQSKFLNDTVTQFYTEHLSALQSGCCKPAEECLFTYENSTSWTKPGNVTSYNNPDCDAWNNNQTVLCFNCQSCKAGFLQNFKTEWKRVAVVNIVFLVLLIIVYSIGCCAFRNNRRENWKGYSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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