Report for Sequence Feature Glyma17g07690
Feature Type: gene_model
Chromosome: Gm17
Start: 5696649
stop: 5699069
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g07690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G28040 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr4:13940881-13942201 FORWARD LENGTH=359
SoyBase E_val: 9.00E-73 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_B9SQE1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9SQE1_RICCO
SoyBase E_val: 3.00E-93 ISS
UniRef100_I1MSX6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSX6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g07690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g07690
Paralog Evidence Comments
Glyma13g01570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g07690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g069200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g07690
Coding sequences of Glyma17g07690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g07690.2 sequence type=CDS gene model=Glyma17g07690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGGTTTAGCTAGCAATCTTCCTCTAATTGTTATGGTGGGTCTGCAAATTCATTATGCAGCACTTGCTATATTCACAAGAGCCGCTTTGTTAGATGGATTGAGTACGACGGTCTTTGTAGTGTACAGGCAAGGCATAGCCACTTTGGCTTTGGCGCCTATGTTTTTCTCTCCTAAGCGAGTCACAGCAAATCAGAATGCATACTTTAAAGGTTTATTTTATGCATCCTCTACTGCAGCTACCGCTATGAGTAATCTGATACCAGCATTAACGTTTGTAATTGCGGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTCGCTGGAGCCTTAACCATGGCTTTGGTACCGATCGCTTCGTGCTGCCCAGACCATTTATCATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAAGCTGCCCTATTTGCCCTTCTTTCAGAGTCGGATCTTCAAGCATGGATTCTACAATCACCTTTACAGATATCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCATGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATAACTGCTTTGATAAGTGCAACATTCCTACAGGAAGAGGTGTACGTTGGAAGTTTGGTAGGTGCTGTTGGAGTTATTGCTGGTTTATATATTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGAGGCGGCACCACAATCATCAAACTTACAAGATGATCATGATATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTGTCAGAGAAATTTCACGCAGCGAAAAATCACACAAGCCCGTGTTAA
Predicted protein sequences of Glyma17g07690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g07690.2 sequence type=predicted peptide gene model=Glyma17g07690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGGLASNLPLIVMVGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPMFFSPKRVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAGFEKVDISLRSTAKILGTVCCVAGALTMALVPIASCCPDHLSSTFWMCLFSTIQAALFALLSESDLQAWILQSPLQISCSLYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALISATFLQEEVYVGSLVGAVGVIAGLYIVLWGKAKEFAEIKPEAAPQSSNLQDDHDISSRIDLEQPLLSEKFHAAKNHTSPC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
