SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14850 | AT | Annotation by Michelle Graham. TAIR10: Alg9-like mannosyltransferase family | chr5:4802099-4804977 REVERSE LENGTH=548 | SoyBase | E_val: 0 | ISS |
| GO:0006505 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor metabolic process | SoyBase | N/A | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0000030 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG1771 | KOG | GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis | JGI | ISS | |
| PTHR22760 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PF03901 | PFAM | Alg9-like mannosyltransferase family | JGI | ISS | |
| UniRef100_G7JEC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPI mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7JEC3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E3BB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E3BB related cluster n=1 Tax=unknown RepID=UPI000233E3BB | SoyBase | E_val: 0 | ISS |
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Glyma17g07620 not represented in the dataset |
Glyma17g07620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g01500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g068600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07620.2 sequence type=CDS gene model=Glyma17g07620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTATTTCAACCCCGACGAACACTGGCAGGGCCCCGAGGTCGCTCATCGCATCGCCTTTGGGTACGGTCACTTAACATGGGAGTGGAAACAAGGTATCCCAAGCTACTTGCATCCCTTCATCTTCGTTCCGCTTTATAGCCTCCTCGCCTTACTGCATCTTGATACCCCATGGCTTATGATGAGGGCTCCACGGCTACTGCAATCTGTATTCTCTGCAGTTGGTGATTTATACTTGTACAAGCTTTCTGCGGTTCTCTTTGGTTACTCTGTTGCAAAATGGACACTTGAGACTGTTCTTACACTAGTTTCTCTATACTTTTGGCCCTGCGTGAGACCTTCCAGCAACTGTTCCTTTCAGTGGCTTGTGCTTATCCGACCAACAAGTGCAATCACATGGCTGTGTGTTTGCCTGCTTGAGCTTTTCCAGGCACATAACAGATTCAGATTCATTTTTTTGGAGGTGGCTCCTATTGGGATCCTAGTGCTTGGACTTAACTGCTTATTAGATTGTTTCATGTATGGCACATGGATTCTAGTACCACTTAATTTTCTAAAATTCAATTTTCTTTCTGTGGGAGGAGATTATTATGGAACTCACAATCATGATCTCTCTCACTTACCATTTTGTATAGCTGGTATCATTTATTCCAAACAATGGAAGTTTCATGGCCTTCTTGCATGGGTTTTGGGTTTCTACAGTTTATTAGGCCACAAGGAATTCAGGTTTGTCTTGCCAGTTCTTCCGATAGTTCTGATGTTTTCTGTTTATTCTTTGGCCATGATAGAAGATCCCGGTTATGCACAGTATAAAGGAAATAAATCTTCAAAAAAGCATACGAGATTTCCTCCCAAGATGGGAGCTGCTATCTTATTTTTGCTTGCTACCAATATTCGAATGGCTTTGTATATGAGTTTGGTTCATCGGAGAGGACCCGAGGATGTCATGAACCACCTTGCTAGAGAAGCTCTTCATGGGAAAGTGAAAAGCATCCTATTCCTAATGCCTTGCCATGCCACTCCCTACTATTCCATGCTGCATCATAACCTGCCAATGCAATTTCTGGACTGCACTCCAAGTGAAGAGAAAGGAGTTCCTGATGAGTCTGACCGTTTCTTGATGGACCCTGTTACATTTGTGTCTGAATATGCAAAAAACAAGTCTCTGCCCAGCCACGTTGTTTTATTTGATTCGGAAGAACAAAAACTGAGGAACCTTTTAATTTCATTTGATTATAGAGAGGAAAAAAGATTTTTTAATGCTCACTTCAAGGTAGACCGTGATCTAGCTTATACGTGCGAATAA
>Glyma17g07620.2 sequence type=predicted peptide gene model=Glyma17g07620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TYFNPDEHWQGPEVAHRIAFGYGHLTWEWKQGIPSYLHPFIFVPLYSLLALLHLDTPWLMMRAPRLLQSVFSAVGDLYLYKLSAVLFGYSVAKWTLETVLTLVSLYFWPCVRPSSNCSFQWLVLIRPTSAITWLCVCLLELFQAHNRFRFIFLEVAPIGILVLGLNCLLDCFMYGTWILVPLNFLKFNFLSVGGDYYGTHNHDLSHLPFCIAGIIYSKQWKFHGLLAWVLGFYSLLGHKEFRFVLPVLPIVLMFSVYSLAMIEDPGYAQYKGNKSSKKHTRFPPKMGAAILFLLATNIRMALYMSLVHRRGPEDVMNHLAREALHGKVKSILFLMPCHATPYYSMLHHNLPMQFLDCTPSEEKGVPDESDRFLMDPVTFVSEYAKNKSLPSHVVLFDSEEQKLRNLLISFDYREEKRFFNAHFKVDRDLAYTCE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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