Glyma17g07600 - SoyBase

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Report for Sequence Feature Glyma17g07600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5600321
stop:	5606444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57740	AT	Annotation by Michelle Graham. TAIR10: XB3 ortholog 2 in Arabidopsis thaliana \| chr5:23394789-23397145 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0010366	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0051865	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24128	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24128:SF158	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G7JEC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-rich protein n=1 Tax=Medicago truncatula RepID=G7JEC0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MSW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07600

Paralog	Evidence	Comments
Glyma13g01480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g068400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g07600

Limit To All Plant Sequences

>Glyma17g07600.4   sequence type=transcript   gene model=Glyma17g07600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCACTTCTCGCTATATTTATCTAACAAACTAAATTATTCCTCACTTAAATTGGACATTCTCTCCCAAATGGGCAATCAATTAGTAATAATATTCCACATGTAATTAAATCAAAACACAATCAATTCGGTGTTAATAATATTTCATGTAATTAAGATAGGTGTTTGACCCCTGGGTAAAAAGTAGTACCACCTTTGAGGCCTCGATCTGTGTGGTGTTTGATAGAGCAAACAGTTATAAGGAATTCTAATTCTTCCACCGCAAAGGGAGGGGACAACGAAAGAAACGACACAACTACCAAGTTGACTCATTAATAATATCCAATCATGGTGACACGCCTTTTGTTGTTGCCTCAAGAAGCTGAAACTTGCCTTTTCCAATTACATCTGTCACCCTTTTGGATATTCCATCTATCTATCTTCTTAGGCATTATTTTTAGCAAATTGCCAGTTTAAGCAAAAGAAATATCTTTTCCCGTTTTCATCGTTGTAATTGGTTTTGCATCTGTTGGGGGCTGATGGTGGAGGTTTGATGCGATCAATCCTCTCCCAGAAAACCACATATTGCCCTTCCGGGTTTTCATCCTTCCGAGGTTAAGGTTGTGGGATTTTCATGCTTATGTGGGTTGTGTAATTTGGAAGGTGATTAATGGCAAATGGTTATTCCTCAAATGATTGTTTGAAAGGAATAGTAGAAAATTGGTGTCTGTCAGGTTCACAGTATCAGCTTGGCAAATTGAAATAGAATAGAGATTTTTCCCAAGAATTTTCGGATTGTTCAAGATTTGATGACTTCATGTCGGGGGTGTTTGTCCAAAAGGGAATTTGAGGCCTTTTGATGAGGCTGTGAAGGGACCCCTGCTTCGAAATTCCTGAATAGTTTAGTCAATTGTGTTTTTTGTCGTGATTGCTAAGGGACATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGATTACATTTTGCTCTTTTCATCATCCTTGTTATATTATACTCGTGATTCCAAATATCATCCACTGTTCACTACATTGACTGTAAATACCAAAGCCCAATTAAATTTCTTTTTTGGCAACATATTTCACAACACAATTTTTGCAAGATTCATGTTTGGTGCTTGTAAATGCAAACTGCTCAATGTGAAATTCGTGACTTACATAATTATCAATAGCAAACCTGTAAACTATTTAAAGAAAAAT

Coding sequences of Glyma17g07600

Limit To All Plant Sequences

>Glyma17g07600.3   sequence type=CDS   gene model=Glyma17g07600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGA

>Glyma17g07600.4   sequence type=CDS   gene model=Glyma17g07600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGA

Predicted protein sequences of Glyma17g07600

Limit To All Plant Sequences

>Glyma17g07600.3   sequence type=predicted peptide   gene model=Glyma17g07600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLSIVGNSFGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAAHGHHEIVNLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLIIFNANIHKADYLNGGTVLHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHKSISEFDQSGLCEVINRTADGGITALHMAVLNGHAESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQCCQLLIAKGANLTAENANGWTPLMVARSWRRDWLEDILKTPPEDPLQVLPSPYISLPLMSIVRIARECGWRTSDLAPCLDPCAVCLERKCMVAVEGCDHEFCTQCAMYLCSTNSTSTTTTGPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTLCTCSSEVLGDSSDMTTPFCKPTSSRGSKSSSPSRSFRSMSCQGFPSFRMNPSLCLGADVSPSLVPCTVSRNVRNHLARCSGSTFRRSSSQTERRKSSWFCSLNQSVATGGNRC*

>Glyma17g07600.4   sequence type=predicted peptide   gene model=Glyma17g07600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLSIVGNSFGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAAHGHHEIVNLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLIIFNANIHKADYLNGGTVLHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHKSISEFDQSGLCEVINRTADGGITALHMAVLNGHAESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQCCQLLIAKGANLTAENANGWTPLMVARSWRRDWLEDILKTPPEDPLQVLPSPYISLPLMSIVRIARECGWRTSDLAPCLDPCAVCLERKCMVAVEGCDHEFCTQCAMYLCSTNSTSTTTTGPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTLCTCSSEVLGDSSDMTTPFCKPTSSRGSKSSSPSRSFRSMSCQGFPSFRMNPSLCLGADVSPSLVPCTVSRNVRNHLARCSGSTFRRSSSQTERRKSSWFCSLNQSVATGGNRC*

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