Glyma17g07590 - SoyBase

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Report for Sequence Feature Glyma17g07590

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5589110
stop:	5591555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30400	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:14867068-14868486 FORWARD LENGTH=472	SoyBase	E_val: 6.00E-113	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF26	Panther	OS08G0445000 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7JEB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JEB6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC28	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC28 related cluster n=1 Tax=unknown RepID=UPI000233EC28	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07590

Paralog	Evidence	Comments
Glyma13g01470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g068300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g07590

Limit To All Plant Sequences

>Glyma17g07590.2   sequence type=transcript   gene model=Glyma17g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAACCGCTAGTTATGCCGGAGGGTGATTTTTTGTTCAAAGGTCCAATCTGATCTCAATAAATTTCACACGGTGACAGATTTGTGTGTCATTATCATTCAAAAATTGTTCATCAAGACTTGCAAATCATTATAATATTCTTTGTCGAGCACCCCCTTTAAAATCCCTGGTCCAAGGAAAAGGAACTCATCCTCCTCCCACTCCCACCTCATATTTTTTGACTTTCCAGACTCAAATCTAAAGCAAGAAAAAACAAAAGGTGAGGTAAACATTTGTCTCCATCAAAAAGCACTGCTCTTTCATTACATGGTGCCTTCCCCTGCCACTTTTTTTCTTTAGCATCCAACCGGAAAATAAAAATAGTACTCTCACTTCCCCCCTTTGTCTATGGCACAAGATGGTGTCTTAAAACTGTGTGATCCTATTTGCACCCTGAAAAAAGTTGCAACCTTTTTTGTGAGTTTTTCTCTGACTCAGCAACATGGGTCATAGGCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCAAACCCACCATTCCCACCCACTACTACTGTTCGATCTGATAGTTTCAGTTTGAACGATAGGGCCTTGAAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACCGCTCTCCAAGGCCAATTGCAGCAACTCTTTCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACACTCCCTGTGTTCCTCTACAAGGCCATCATAGGGCTCAAGAAGTACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTAAGGTTGCTACCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGATCAATTCTCTGCAACCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAAATCGTTCCCGAAAGAGTGGGTGCTTCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAGATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCGACCCGTGTGGATTTGATGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCTAATGGTGTGGAAAAAGTTGTTACTGTGAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTAGTACTAGTACCAACAACGTGGATGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTCATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATTATAGTTGAGGATGATGCTGCTACTAGTACTGGGGCTACAACTTCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATTCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGATTCCCGGCGAAGTCGAGTGTTGTTACTGCTGCTTCTGGTAGTGCTCATGATGATGATGATGATGACTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGTCTAGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAGTTTCTCTCTTTCTTTACCCCCTTTTTTCTTTGATCCATTTTTTTGCTTCCTTTATCTATAGTTCTGGAATCTAAATTTGTTTAAAATAGAATGTTAGTGGTAGAAAGGTGCAAGAGAGATGGAAAAGTGAGATGAGTTGGGAAATCTGAATACAGTGTTTCTGCTTTGAGTTTGTTGCTGTTCCATTGAATATGAGCCCACTACGTTGAGGGTAAAAAAATGCAGAAGAAAGATTTTTTTTTTTTTTTTGTTTCCTCCTCGGTGATTTCTCAGTCAAATATTTACGTTTCAGTTTTCACTTGATACTGCAATCTTGTAATATTTTGTAAATTTTCTCCAATTCTCTTAATCTTATTACCAGCAGATATATATGTTCTTGCAATAATGTGATAAATC

Coding sequences of Glyma17g07590

Limit To All Plant Sequences

>Glyma17g07590.1   sequence type=CDS   gene model=Glyma17g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCATAGGCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCAAACCCACCATTCCCACCCACTACTACTGTTCGATCTGATAGTTTCAGTTTGAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTGATCATCATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTGCACCTTCTTGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACCGCTCTCCAAGGCCAATTGCAGCAACTCTTTCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACACTCCCTGTGTTCCTCTACAAGGCCATCATAGGGCTCAAGAAGTACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTAAGGTTGCTACCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGATCAATTCTCTGCAACCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAAATCGTTCCCGAAAGAGTGGGTGCTTCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAGATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCGACCCGTGTGGATTTGATGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCTAATGGTGTGGAAAAAGTTGTTACTGTGAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTAGTACTAGTACCAACAACGTGGATGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTCATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATTATAGTTGAGGATGATGCTGCTACTAGTACTGGGGCTACAACTTCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATTCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGATTCCCGGCGAAGTCGAGTGTTGTTACTGCTGCTTCTGGTAGTGCTCATGATGATGATGATGATGACTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGTCTAGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG

>Glyma17g07590.2   sequence type=CDS   gene model=Glyma17g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGATCAATTCTCTGCAACCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAAATCGTTCCCGAAAGAGTGGGTGCTTCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAGATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCGACCCGTGTGGATTTGATGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCTAATGGTGTGGAAAAAGTTGTTACTGTGAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTAGTACTAGTACCAACAACGTGGATGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTCATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATTATAGTTGAGGATGATGCTGCTACTAGTACTGGGGCTACAACTTCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATTCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGATTCCCGGCGAAGTCGAGTGTTGTTACTGCTGCTTCTGGTAGTGCTCATGATGATGATGATGATGACTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGTCTAGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG

Predicted protein sequences of Glyma17g07590

Limit To All Plant Sequences

>Glyma17g07590.1   sequence type=predicted peptide   gene model=Glyma17g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHRPPEQPPYFLSEPNPPFPPTTTVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKKYPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDQFSATNACSPIVLVLESGSSESSREIVPERVGASAAVGRTSSVMTTDSRLGCRGDSEFGSTRVDLMKSGELLSEIPDPTVPNGVEKVVTVKLGKFRSVDGGGEGGEGSSSSTSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIIVEDDAATSTGATTSSTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNSVADSSRRAVSFRFPAKSSVVTAASGSAHDDDDDDLKGKNCKFDTRSTISEMDIGKWENGGGSEFDYDDENQSCYSLDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL*

>Glyma17g07590.2   sequence type=predicted peptide   gene model=Glyma17g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECIDTWLLSHSTCPLCRASLLPDQFSATNACSPIVLVLESGSSESSREIVPERVGASAAVGRTSSVMTTDSRLGCRGDSEFGSTRVDLMKSGELLSEIPDPTVPNGVEKVVTVKLGKFRSVDGGGEGGEGSSSSTSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIIVEDDAATSTGATTSSTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNSVADSSRRAVSFRFPAKSSVVTAASGSAHDDDDDDLKGKNCKFDTRSTISEMDIGKWENGGGSEFDYDDENQSCYSLDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL*

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