Glyma17g07480 - SoyBase

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Report for Sequence Feature Glyma17g07480

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5479095
stop:	5486338
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30340	AT	Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 7 \| chr4:14838465-14840941 REVERSE LENGTH=492	SoyBase	E_val: 0	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
PTHR11255	Panther	DIACYLGLYCEROL KINASE	JGI		ISS
PTHR11255:SF32	Panther		JGI		ISS
PF00609	PFAM	Diacylglycerol kinase accessory domain	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_G7JD57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase n=1 Tax=Medicago truncatula RepID=G7JD57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MSV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSV0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07480

Paralog	Evidence	Comments
Glyma13g01360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g067400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07480

Limit To All Plant Sequences

>Glyma17g07480.1   sequence type=CDS   gene model=Glyma17g07480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGCCGTCGACCACGGGTGACACGAACAAGATTGCGGTTCGGTCGTCGCTCGTGGAATCGTTTCGCGGCTGCGGTATTTCCGGGATCCGAATTGACAAGGAGGAGTTGAAGAAGCAGCTGACAATGCCGCAGTACCTGCGCTATGCAATGCGTGATTCCATTCGGCTTCAGGACCCCGTCGCCGGCGAGTCCCGCTACATCAACCGTGCCGAGGGCGAGGACGCCGCCGCTCCGCTCTGCCCCATGGTCGTCTTCATCAACCCCCGCAGCGGCGGCCGCCACGGCCCCGCCCTCAAGGAGAGACTCCAGCAACTCATGAGTGAAGAGCAGGTTTTTGATCTGTCGGATGTGAAGCCTCATGAATTTGTACGGTATGGATTGAGTTGCCTGGAGATGTTGGCTGGTCTTGGTGACTCTTGTGCCAAAGAAACTCGTGAAAGAATCAGGGTTATGGTTGCTGGAGGTGATGGTACAGTTGGTTGGGTATTAGGATGTCTAACAGAACTTCGCACACAGGGTCGGGAGCCAGTTCCCCCAGTGGGTATCATACCACTGGGGACAGGCAATGACCTGTCTAGGAGTTTTCATTGGGGTGGATCATTTCCGTTTGCATGGAGGTCTGCAATTAAGCGAACTCTTCAAAGGGCTAGTAACGGGACTGTTAACCGTTTGGATAGTTGGCGAGTTTCACTTTCAATGCCAGAAGGTACACCTGTGGTCCTACCTCATTGTTTCAAGCATACAGAAGAGTTCTCTCTTGATCAGGGCTTTGAAATTGATGGAGAACTACCGGAGAAGGTTGCAAGTTATGAAGGCGTGTACTATAATTACTTCAGCATAGGAATGGATGCCCAAGTGGCTTATGGTTTCCATCATCTACGCAATGAAAAACCTTACCTTGCCAGTGGTCCAATTTCAAATAAGATTATATACTCGGGTTACAGTTGCACACAGGGCTGGTTTTTCACACCTTGCGTTAGTGATCCAGGTCTAAGGGGACTTAAAAACATTTTGCGGATGCATATCAAAAGGGTCAATAGCTCAGAGTGGGAGCAGATTGCAATTCCTACAAGTGTAAGGGCAATAGTTGCTTTGAACCTTCATAGCTATGGAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGATTATTTGGAAAAGAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATATATGCAAATGGATGGAGAACCTTGGAAACAACCATTGAGCAAGGACTTCTCCACATACGTGGAAATAAAGAGGGAGCCTTTCCAGTCACTTGTTATCAGTGGGAAGTAA

Predicted protein sequences of Glyma17g07480

Limit To All Plant Sequences

>Glyma17g07480.1   sequence type=predicted peptide   gene model=Glyma17g07480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPSTTGDTNKIAVRSSLVESFRGCGISGIRIDKEELKKQLTMPQYLRYAMRDSIRLQDPVAGESRYINRAEGEDAAAPLCPMVVFINPRSGGRHGPALKERLQQLMSEEQVFDLSDVKPHEFVRYGLSCLEMLAGLGDSCAKETRERIRVMVAGGDGTVGWVLGCLTELRTQGREPVPPVGIIPLGTGNDLSRSFHWGGSFPFAWRSAIKRTLQRASNGTVNRLDSWRVSLSMPEGTPVVLPHCFKHTEEFSLDQGFEIDGELPEKVASYEGVYYNYFSIGMDAQVAYGFHHLRNEKPYLASGPISNKIIYSGYSCTQGWFFTPCVSDPGLRGLKNILRMHIKRVNSSEWEQIAIPTSVRAIVALNLHSYGSGRNPWGKPKPDYLEKRGFVEADVADGLLEVFGLKQGWHASFVMVELISAKHLVQASAIRLEVRGGQWKNAYMQMDGEPWKQPLSKDFSTYVEIKREPFQSLVISGK*

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