Glyma17g07420 - SoyBase

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Report for Sequence Feature Glyma17g07420

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5413812
stop:	5415804
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57660	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 5 \| chr5:23355573-23356729 FORWARD LENGTH=355	SoyBase	E_val: 4.00E-120	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_D0EP03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP03_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D0EP03	UniRef	Annotation by Michelle Graham. Best UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP03_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g07420

Locus	Gene Symbol	Protein Name
	COL4b	Constans-like 4b

Expression Patterns of Glyma17g07420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07420

Paralog	Evidence	Comments
Glyma13g01290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g066600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07420

Limit To All Plant Sequences

>Glyma17g07420.1   sequence type=CDS   gene model=Glyma17g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTGAAAGAGGAGGCTTCAAGGGATTCAGGAGCGCCTGGAGCGTGCCGCCCAAGCCGTGCGATTCCTGCAAGCTGGCCTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGATTCCAACATTCACTGCTCGAACAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTGCTGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCGAACCCCCTCGCGCAACGCCACGAGCGCGTCCCCGTGGAACCTTTCTTTGACTCCGCTGAGTCCATAGTGAAAGCCTCTGCTGCCGCCACCTTCGGGTTCATTGTCCCATCCGACGACGGCGGCGCCTCCGACGCTTTCGCCCCCGATGACTCCGACGCCGCCGCGTGGCTCATCCCGAACCCTAATTTCGGGTCCAAGCTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAAAACCCTCTCTCGCCCCTCCCCTAATCAATAATCACCACCACCACCAATCAGAAACTTGCTTCGACGTCGATTTTTGTCGCTCGAAGCTCTCCTCCTTTAACTACCCTTCCAATTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACGGTGTCAGACATGTCGTATTCTTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTTGTTGTGTCAGGAAATAGTGTGGGGCAAGGTGCGACGCAGTTGTGTGGAATGGATCGGGAAGCGAGGGTACTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACAATTCGATACGCATCGCGAAAAGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGCTTCGCCAAACGAACAGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCCCTGCGGTGCTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG

Predicted protein sequences of Glyma17g07420

Limit To All Plant Sequences

>Glyma17g07420.1   sequence type=predicted peptide   gene model=Glyma17g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIHCSNKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASAAATFGFIVPSDDGGASDAFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQKPSLAPPLINNHHHHQSETCFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGPAVLMLDTPYGVVPSF*

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