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Report for Sequence Feature Glyma17g07420

Feature Type:gene_model
Chromosome:Gm17
Start:5413812
stop:5415804
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57660AT Annotation by Michelle Graham. TAIR10: CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355 SoyBaseE_val: 4.00E-120ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1601 KOG GATA-4/5/6 transcription factors JGI ISS
PF00643PFAM B-box zinc finger JGI ISS
PF06203PFAM CCT motif JGI ISS
UniRef100_D0EP03UniRef Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP03_SOYBN SoyBaseE_val: 0ISS
UniRef100_D0EP03UniRef Annotation by Michelle Graham. Best UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP03_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
COL4b Constans-like 4b

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g01290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g066600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g07420.1   sequence type=CDS   gene model=Glyma17g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTGAAAGAGGAGGCTTCAAGGGATTCAGGAGCGCCTGGAGCGTGCCGCCCAAGCCGTGCGATTCCTGCAAGCTGGCCTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGATTCCAACATTCACTGCTCGAACAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTGCTGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCGAACCCCCTCGCGCAACGCCACGAGCGCGTCCCCGTGGAACCTTTCTTTGACTCCGCTGAGTCCATAGTGAAAGCCTCTGCTGCCGCCACCTTCGGGTTCATTGTCCCATCCGACGACGGCGGCGCCTCCGACGCTTTCGCCCCCGATGACTCCGACGCCGCCGCGTGGCTCATCCCGAACCCTAATTTCGGGTCCAAGCTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAAAACCCTCTCTCGCCCCTCCCCTAATCAATAATCACCACCACCACCAATCAGAAACTTGCTTCGACGTCGATTTTTGTCGCTCGAAGCTCTCCTCCTTTAACTACCCTTCCAATTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACGGTGTCAGACATGTCGTATTCTTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTTGTTGTGTCAGGAAATAGTGTGGGGCAAGGTGCGACGCAGTTGTGTGGAATGGATCGGGAAGCGAGGGTACTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACAATTCGATACGCATCGCGAAAAGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGCTTCGCCAAACGAACAGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCCCTGCGGTGCTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG

>Glyma17g07420.1   sequence type=predicted peptide   gene model=Glyma17g07420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIHCSNKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASAAATFGFIVPSDDGGASDAFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQKPSLAPPLINNHHHHQSETCFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGPAVLMLDTPYGVVPSF*







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