Glyma17g07180 - SoyBase

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Report for Sequence Feature Glyma17g07180

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5244177
stop:	5247293
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21240	AT	Annotation by Michelle Graham. TAIR10: 4-coumarate:CoA ligase 2 \| chr3:7454497-7457314 REVERSE LENGTH=556	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016207	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity	SoyBase	N/A	ISS
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24096:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_B9N2Y9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-Coumarate:CoA ligase n=2 Tax=Populus trichocarpa RepID=B9N2Y9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1MSS1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MSS1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g07180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g064500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07180

Limit To All Plant Sequences

>Glyma17g07180.1   sequence type=CDS   gene model=Glyma17g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGCAACAAGCTCACCACGACTTCATTTTCCATTCCAAACTCCCCGACATTTACATCCCATCGCACCTCCCTCTCCACACCTACATTTTCCAAAACCTTTCCCAATTCAAACACCGTCCCTGCCTCATCAACGGGACCACCGGCGAGACCTTCTCCTACCACGCCATCCAACTCACCGCCCGCAGAGTCGCCTCCGGTCTCAACAAACTCGGCATCCAAAAAGGCGACGTCATCCTCCTCCTCCTCCAGAACTGCCCCCAATTCGTCCTCGCATTCCTCGGCGCCTCCTACCGCGGTGCCACTGTCACCACCGCCAATCCCTTCTACACTCCGGCGGAGGTAGCGAAACAAGCCACAGCGTCCAACTCCAAACTCATCATAACGCAAGCATCTTACGTGGATAAAGTCAAGGATTTCGCGAGAGAAAACGACGTCAAAGTGATATGCGTTGACTCGGCGCCGGAAGGATACCTTCCCTTCTCGGAGTTAACGGAGGCCGACGAGGGAGACATTCCCGCCGTTAAAATATCTCAAGATGACGTGGTTGCGCTGCCGTACTCGTCTGGCACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGACTCGTTACGAGCGTGGCTCAACAGGTTGACGGAGAGAACCCTAATTTGTATTTTCGGAGCAGCGATGTGGTTTTGTGCTTGCTTCCACTTTTCCACATTTATGCTCTCAACTCTGTTTTGCTGTGTTCCCTTCGAGTAGGGGCTTCCGTTTTGATCGTGCCGAAATTTGAGATCATTACGTTGCTGGAGTTGATCCAGAAACACAAGGTGAGCATCGCGCCGTTTGTGCCGCCCATCGTATTGACCGTTGCAAAGAGTCCCGATTTGGAGCGATACGACTTGTCGTCGATTCGAATGATTATGTCGGGTGCGGCACCTATGGGCAAAGAACTTGAGGATTCTCTCAGGGCCAAACTTCCCAACGCCATACTCGGACAGGGTTACGGGATGACAGAGGCAGGGCCAGTGCTATCAATGTGCTTAGCGTTTGCGAAGGAGCCAATGCAGGTGAAATCAGGTGCCTGCGGGACTGTCGTAAGAAATGCGGAGATGAAGATCGTTGACCCTCGAACTGGTGCTTCGCTTCATAGAAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATCAAGAGGCCACACAAAGAACTATAGACAAGGAAGGATGGTTGCATACCGGCGATATTGGATACATTGACGATGATGATGAGCTTTTCGTAGTTGATCGGTTAAAGGATCTTATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATTTTAATTGCTCACCCAAGCATTTCTGATGCTGCTGTTGTGTCCATGAAGGATGAAGTTGCGGGAGAGGTTCCTATTGCATTTCTTGTACGATCAAATGGTTCTAAGGTCACCGAGGATGAAATCATGCGATACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATTCCAAAGGCCCCCTCTGGAAAGATCTTGCGGAAAGACCTTAGGGCAAGGTATTGA

Predicted protein sequences of Glyma17g07180

Limit To All Plant Sequences

>Glyma17g07180.1   sequence type=predicted peptide   gene model=Glyma17g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEQQAHHDFIFHSKLPDIYIPSHLPLHTYIFQNLSQFKHRPCLINGTTGETFSYHAIQLTARRVASGLNKLGIQKGDVILLLLQNCPQFVLAFLGASYRGATVTTANPFYTPAEVAKQATASNSKLIITQASYVDKVKDFARENDVKVICVDSAPEGYLPFSELTEADEGDIPAVKISQDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRSSDVVLCLLPLFHIYALNSVLLCSLRVGASVLIVPKFEIITLLELIQKHKVSIAPFVPPIVLTVAKSPDLERYDLSSIRMIMSGAAPMGKELEDSLRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEPMQVKSGACGTVVRNAEMKIVDPRTGASLHRNQAGEICIRGNQIMKGYLNDQEATQRTIDKEGWLHTGDIGYIDDDDELFVVDRLKDLIKYKGFQVAPAELEAILIAHPSISDAAVVSMKDEVAGEVPIAFLVRSNGSKVTEDEIMRYISKQVVFYKRISRVFFVGSIPKAPSGKILRKDLRARY*

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