Report for Sequence Feature Glyma17g07180
Feature Type: gene_model
Chromosome: Gm17
Start: 5244177
stop: 5247293
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g07180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21240 AT
Annotation by Michelle Graham. TAIR10: 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009411 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to UV
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009698 GO-bp
Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process
SoyBase N/A ISS
GO:0009805 GO-bp
Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process
SoyBase N/A ISS
GO:0009963 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016207 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity
SoyBase N/A ISS
KOG1176
KOG
Acyl-CoA synthetase
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24096:SF43 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_B9N2Y9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 4-Coumarate:CoA ligase n=2 Tax=Populus trichocarpa RepID=B9N2Y9_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1MSS1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MSS1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g07180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma17g07180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g064500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g07180
Coding sequences of Glyma17g07180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g07180.1 sequence type=CDS gene model=Glyma17g07180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAGCAACAAGCTCACCACGACTTCATTTTCCATTCCAAACTCCCCGACATTTACATCCCATCGCACCTCCCTCTCCACACCTACATTTTCCAAAACCTTTCCCAATTCAAACACCGTCCCTGCCTCATCAACGGGACCACCGGCGAGACCTTCTCCTACCACGCCATCCAACTCACCGCCCGCAGAGTCGCCTCCGGTCTCAACAAACTCGGCATCCAAAAAGGCGACGTCATCCTCCTCCTCCTCCAGAACTGCCCCCAATTCGTCCTCGCATTCCTCGGCGCCTCCTACCGCGGTGCCACTGTCACCACCGCCAATCCCTTCTACACTCCGGCGGAGGTAGCGAAACAAGCCACAGCGTCCAACTCCAAACTCATCATAACGCAAGCATCTTACGTGGATAAAGTCAAGGATTTCGCGAGAGAAAACGACGTCAAAGTGATATGCGTTGACTCGGCGCCGGAAGGATACCTTCCCTTCTCGGAGTTAACGGAGGCCGACGAGGGAGACATTCCCGCCGTTAAAATATCTCAAGATGACGTGGTTGCGCTGCCGTACTCGTCTGGCACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGACTCGTTACGAGCGTGGCTCAACAGGTTGACGGAGAGAACCCTAATTTGTATTTTCGGAGCAGCGATGTGGTTTTGTGCTTGCTTCCACTTTTCCACATTTATGCTCTCAACTCTGTTTTGCTGTGTTCCCTTCGAGTAGGGGCTTCCGTTTTGATCGTGCCGAAATTTGAGATCATTACGTTGCTGGAGTTGATCCAGAAACACAAGGTGAGCATCGCGCCGTTTGTGCCGCCCATCGTATTGACCGTTGCAAAGAGTCCCGATTTGGAGCGATACGACTTGTCGTCGATTCGAATGATTATGTCGGGTGCGGCACCTATGGGCAAAGAACTTGAGGATTCTCTCAGGGCCAAACTTCCCAACGCCATACTCGGACAGGGTTACGGGATGACAGAGGCAGGGCCAGTGCTATCAATGTGCTTAGCGTTTGCGAAGGAGCCAATGCAGGTGAAATCAGGTGCCTGCGGGACTGTCGTAAGAAATGCGGAGATGAAGATCGTTGACCCTCGAACTGGTGCTTCGCTTCATAGAAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATCAAGAGGCCACACAAAGAACTATAGACAAGGAAGGATGGTTGCATACCGGCGATATTGGATACATTGACGATGATGATGAGCTTTTCGTAGTTGATCGGTTAAAGGATCTTATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATTTTAATTGCTCACCCAAGCATTTCTGATGCTGCTGTTGTGTCCATGAAGGATGAAGTTGCGGGAGAGGTTCCTATTGCATTTCTTGTACGATCAAATGGTTCTAAGGTCACCGAGGATGAAATCATGCGATACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATTCCAAAGGCCCCCTCTGGAAAGATCTTGCGGAAAGACCTTAGGGCAAGGTATTGA
Predicted protein sequences of Glyma17g07180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g07180.1 sequence type=predicted peptide gene model=Glyma17g07180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEQQAHHDFIFHSKLPDIYIPSHLPLHTYIFQNLSQFKHRPCLINGTTGETFSYHAIQLTARRVASGLNKLGIQKGDVILLLLQNCPQFVLAFLGASYRGATVTTANPFYTPAEVAKQATASNSKLIITQASYVDKVKDFARENDVKVICVDSAPEGYLPFSELTEADEGDIPAVKISQDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRSSDVVLCLLPLFHIYALNSVLLCSLRVGASVLIVPKFEIITLLELIQKHKVSIAPFVPPIVLTVAKSPDLERYDLSSIRMIMSGAAPMGKELEDSLRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEPMQVKSGACGTVVRNAEMKIVDPRTGASLHRNQAGEICIRGNQIMKGYLNDQEATQRTIDKEGWLHTGDIGYIDDDDELFVVDRLKDLIKYKGFQVAPAELEAILIAHPSISDAAVVSMKDEVAGEVPIAFLVRSNGSKVTEDEIMRYISKQVVFYKRISRVFFVGSIPKAPSGKILRKDLRARY*