SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18840 | AT | Annotation by Michelle Graham. TAIR10: Integral membrane Yip1 family protein | chr2:8158288-8159848 FORWARD LENGTH=281 | SoyBase | E_val: 9.00E-128 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2946 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21236 | Panther | GOLGI MEMBRANE PROTEIN YIP1 | JGI | ISS | |
| PTHR21236:SF1 | Panther | YIP1-RELATED | JGI | ISS | |
| PF04893 | PFAM | Yip1 domain | JGI | ISS | |
| UniRef100_B6TPW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Yip1 domain family member 6 n=1 Tax=Zea mays RepID=B6TPW7_MAIZE | SoyBase | E_val: 5.00E-123 | ISS |
| UniRef100_I1MSR5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSR5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma17g07130 not represented in the dataset |
Glyma17g07130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g01030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g064000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g07130.2 sequence type=transcript gene model=Glyma17g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCATGATTGCGTTCCTTGAAGTTAGTTTGCTTTCAATTTTATATGAATAATAACATAACATAAGAATAGTTTATATGAACACGCAAGGTAAGTTAAGGAGACCAAAGGAAGAAGAAGAAGTAGTGGAGTGATCCTGGTTGGGTGTGAAAAATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATTGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCTCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGCCGCCCCTTCCCCCTTCATCTCCTCCAACCTCCCTCCACCGCCACCCCTCCCTAAATCCTCCGTCTCCGCCGTCCCTCCGCCCCCTCCCCCGCCGCGCGCCGACATCTCCTCCTCCGGGTTCGGCTCCGCCCCCAACACGCTCACTGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTTCCGCGAGGACCCCGGTAAGGCCCTCAGGGATTGGGATCTGTGGGGCCCTTTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAACGTACTTCTTCTGGGTGGACACATTATTTTCTTTCAGAGTCTGAGTCTGTTGGGTTATTGCTTGTTCCCTCTGGACGTCGGTGCATTAATTTGTATGTTGAAGGACAATGTCATAGTGAAAGTGGTTGTTGTGTGTGTGACATTGGCTTGGAGCTCTTGGGCTGCATATCCTTTCATGAGTTCTGCAGTCAACCCCAGGAGAAAAGCTCTTGCACTCTACCCAGTTTTTCTCATGTATGTATCTGTTGGTTTTCTCATCATTGCCATTGACTAAATGCATCAATGCTTCTGATTTCTTTATTACGATAACCACCTGGAATCTGCTTCTAAATAGGAATTTTTGTTTGATGATCAACCATTTTTTTTTAATTCTTTTCTGCCCCTCCTTTTTTCTGTTTAAAATTTGGTTAGATATATTTGAAGACAAACAGTTGTATAATATTACGTGGAAAGTATATGGTGGGATCAAACTTGCTACATAAGTATTGTTTCTCTTTCTATTATGTATTATTTAATGTGTGAATGGGAATACTGATAGGATTGAAGGATCCAAAGAAAGAAAGAAATTGAACAAATGGATTATTTTATTTTGGGGAAAAAATTACACTGATACCCCTTATGTTAGGTCTAATGAGCGTACACTTGACATATCT
>Glyma17g07130.1 sequence type=CDS gene model=Glyma17g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATTGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCTCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGCCGCCCCTTCCCCCTTCATCTCCTCCAACCTCCCTCCACCGCCACCCCTCCCTAAATCCTCCGTCTCCGCCGTCCCTCCGCCCCCTCCCCCGCCGCGCGCCGACATCTCCTCCTCCGGGTTCGGCTCCGCCCCCAACACGCTCACTGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTTCCGCGAGGACCCCGGTAAGGCCCTCAGGGATTGGGATCTGTGGGGCCCTTTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAACGTACTTCTTCTGGGTGGACACATTATTTTCTTTCAGAGTCTGAGTCTGTTGGGTTATTGCTTGTTCCCTCTGGACGTCGGTGCATTAATTTGTATGTTGAAGGACAATGTCATAGTGAAAGTGGTTGTTGTGTGTGTGACATTGGCTTGGAGCTCTTGGGCTGCATATCCTTTCATGAGTTCTGCAGTCAACCCCAGGAGAAAAGCTCTTGCACTCTACCCAGTTTTTCTCATGGGTAAAACACCCCAATTACACACCAACAGAAAGGGGCAAAGATATCCCTCCAACATCTTCAGCTAG >Glyma17g07130.2 sequence type=CDS gene model=Glyma17g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATTGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCTCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGCCGCCCCTTCCCCCTTCATCTCCTCCAACCTCCCTCCACCGCCACCCCTCCCTAAATCCTCCGTCTCCGCCGTCCCTCCGCCCCCTCCCCCGCCGCGCGCCGACATCTCCTCCTCCGGGTTCGGCTCCGCCCCCAACACGCTCACTGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTTCCGCGAGGACCCCGGTAAGGCCCTCAGGGATTGGGATCTGTGGGGCCCTTTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAACGTACTTCTTCTGGGTGGACACATTATTTTCTTTCAGAGTCTGAGTCTGTTGGGTTATTGCTTGTTCCCTCTGGACGTCGGTGCATTAATTTGTATGTTGAAGGACAATGTCATAGTGAAAGTGGTTGTTGTGTGTGTGACATTGGCTTGGAGCTCTTGGGCTGCATATCCTTTCATGAGTTCTGCAGTCAACCCCAGGAGAAAAGCTCTTGCACTCTACCCAGTTTTTCTCATGTATGTATCTGTTGGTTTTCTCATCATTGCCATTGACTAA
>Glyma17g07130.1 sequence type=predicted peptide gene model=Glyma17g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHSDTIPLHPSSQSDIDEIENLINASVHQSVPSARPPSPPRASIPVSVSAAPSPFISSNLPPPPPLPKSSVSAVPPPPPPPRADISSSGFGSAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVIVKVVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMGKTPQLHTNRKGQRYPSNIFS* >Glyma17g07130.2 sequence type=predicted peptide gene model=Glyma17g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSHSDTIPLHPSSQSDIDEIENLINASVHQSVPSARPPSPPRASIPVSVSAAPSPFISSNLPPPPPLPKSSVSAVPPPPPPPRADISSSGFGSAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVIVKVVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
