Glyma17g07100 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g07100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5159888
stop:	5163931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18860	AT	Annotation by Michelle Graham. TAIR10: Syntaxin/t-SNARE family protein \| chr2:8164358-8165650 FORWARD LENGTH=296	SoyBase	E_val: 2.00E-79	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF09177	PFAM	Syntaxin 6, N-terminal	JGI		ISS
UniRef100_G7JVG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin family protein n=1 Tax=Medicago truncatula RepID=G7JVG6_MEDTR	SoyBase	E_val: 3.00E-177	ISS
UniRef100_I1MSR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07100

Paralog	Evidence	Comments
Glyma20g21200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g063600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07100

Limit To All Plant Sequences

>Glyma17g07100.1   sequence type=CDS   gene model=Glyma17g07100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTAGCTAATAGCTTTGATCTATGGCGAAAGGACGGTTTTTTCTCTGCGGCAGAAGAGGTGCAGGAATCAGCTGATATAATGGAATCTGCATACAGGGCATGGTTGAGAGAGAAGAGAGAAAGGTCAACTCCTGAGGAATTAAATGAACTATGCAGAGAGCTGCAAACTGCTTTAGGTACCGCAAAATGGCAGTTGGAAGAATTTGATAAAGCCGTCAGGCTAAGCTACCGACATCACGGTGATGACAATACATCCACTAGGCATAGGCAGTTTATTTCTGCCATTGAAAGCCAAATTACCCAGGTTGAAGCAGCACTGAGGGAATCTTACATTGAGGAAGGTAAGCAACCACTTCGGTGGGTAAACCTTGATGAAGAAGAGCGAGATGATCTGGCTGCCTTTCTATCTGGAACTTGTCAGACCACACAAAGCACTAACGATGACTGCATGGAGGTGAAACAAGCCAAGAAAGAAGATAAGATTGTAGATATAAACACTTTCCGCAACCGGGATATATCTGCTAGTGAAAAGTCTTCTAAGGATGTCATTTCTGTTAACAAGGATACAGATTATGTGATAGAAATAAAAGCAGATGCTGTTTCTAGAAGTAATGATGATGTAGTTTCTCAAACAGATCGAACAACTAGTACAAGGAAAACATGGAGTCCACCTAATTATGGTGCTTTAAAAATTGTAATTGCTGATGAAGATGAGCAGAGAGATAAACCTACACGGACTGTTGATGCCACCCCTAAAGAAAAAGGATTCAGAAATCTATTTTGGAAACAAAAGTTTGAAGAGTATCCTCAGGCCATGCGAGTAGTTCATATGTTCAATCAGCGTTTTGGGCGCATAGGTATATGCCAGAGCCAGAGGCAGTTTCAAAGTCCCTTGCACTTGCGATATGGCTGTTCTGTTCAAGTTACACTTGCTCTAATGTTGACCATTTTTCTCATTGTTCCCTTTGTACTTTATTCAACTTGA

Predicted protein sequences of Glyma17g07100

Limit To All Plant Sequences

>Glyma17g07100.1   sequence type=predicted peptide   gene model=Glyma17g07100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVANSFDLWRKDGFFSAAEEVQESADIMESAYRAWLREKRERSTPEELNELCRELQTALGTAKWQLEEFDKAVRLSYRHHGDDNTSTRHRQFISAIESQITQVEAALRESYIEEGKQPLRWVNLDEEERDDLAAFLSGTCQTTQSTNDDCMEVKQAKKEDKIVDINTFRNRDISASEKSSKDVISVNKDTDYVIEIKADAVSRSNDDVVSQTDRTTSTRKTWSPPNYGALKIVIADEDEQRDKPTRTVDATPKEKGFRNLFWKQKFEEYPQAMRVVHMFNQRFGRIGICQSQRQFQSPLHLRYGCSVQVTLALMLTIFLIVPFVLYST*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain