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Report for Sequence Feature Glyma17g07070

Feature Type:gene_model
Chromosome:Gm17
Start:5141524
stop:5142254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g07070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59970AT Annotation by Michelle Graham. TAIR10: Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103 SoyBaseE_val: 7.00E-67ISS
GO:0006334GO-bp Annotation by Michelle Graham. GO Biological Process: nucleosome assembly SoyBaseN/AISS
GO:0000786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG3467 KOG Histone H4 JGI ISS
PTHR10484Panther HISTONE H4 JGI ISS
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI ISS
UniRef100_B6T0P4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone H4 n=1 Tax=Zea mays RepID=B6T0P4_MAIZE SoyBaseE_val: 2.00E-65ISS
UniRef100_B6T0P4UniRef Annotation by Michelle Graham. Best UniRef hit: Histone H4 n=1 Tax=Zea mays RepID=B6T0P4_MAIZE SoyBaseE_val: 2.00E-65ISS

Expression Patterns of Glyma17g07070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07070
ParalogEvidenceComments
Glyma20g21230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g063200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g07070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g07070
>Glyma17g07070.1   sequence type=CDS   gene model=Glyma17g07070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGAAGAGGAAAGGGAGGCAAGGGTCTCGGAAAGGGAGGAGCCAAACGACACCGTAAGGTTCTGAGGGATAACATTCAGGGAATCACCAAGCCCGCGATTCGCCGTCTGGCCAGACGTGGTGGCGTCAAGCGTATCAGTGGTCTTATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAGAACGTCATTCGTGACGCTGTCACCTACACTGAACACGCTCGCCGCAAGACCGTCACTGCCATGGACGTTGTTTACGCCCTCAAGAGGCAGGGGAGGACCCTTTACGGATTTGGCGGTTAG
Predicted protein sequences of Glyma17g07070
>Glyma17g07070.1   sequence type=predicted peptide   gene model=Glyma17g07070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*






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