Glyma17g07020 - SoyBase

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Report for Sequence Feature Glyma17g07020

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5099038
stop:	5104072
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02920	AT	Annotation by Michelle Graham. TAIR10: Replication protein A, subunit RPA32 \| chr3:651844-654189 REVERSE LENGTH=278	SoyBase	E_val: 5.00E-48	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR13989	Panther	REPLICATION PROTEIN A-RELATED	JGI		ISS
PTHR13989:SF7	Panther	REPLICATION PROTEIN A	JGI		ISS
PF01336	PFAM	OB-fold nucleic acid binding domain	JGI		ISS
UniRef100_G7JVE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication factor A protein n=1 Tax=Medicago truncatula RepID=G7JVE0_MEDTR	SoyBase	E_val: 6.00E-71	ISS
UniRef100_I1MSQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSQ4_SOYBN	SoyBase	E_val: 1.00E-129	ISS

Expression Patterns of Glyma17g07020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07020

Paralog	Evidence	Comments
Glyma13g00960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g062700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g07020

Limit To All Plant Sequences

>Glyma17g07020.2   sequence type=transcript   gene model=Glyma17g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAGAAAGATGTATTCGAGTCCAAGCCAGTTCGACGGAAATGCAGCCTTCTCCGGTGGTGGATTCATGCCTTCTCAGACCACTCAGGGCCCCGACTCTTCGTTGGTTCCTTCCAAGAATCGCGACGCTCAGTCCTTGCTTCCTCTGACAGTGAAGCAGATATACGATGCAGTCAAGCGATGATAGAATCAATTTGATTGTTGATGGTGTGGACGTTACCAATGTCACTCTTGTAGGAAGGGTGTCCAACAAAACTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGAAGGATTGAGTGTAGTAAATGGCTTCATGAAGCTGTTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACAATTAAAACATTTTCAGCGTAAAAGGACCTTAACTGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCTAGTCATTTCAGCGATTGCATATATGTGCATCTCTACAATTCCAGATTAAGGTCTAGTGTCCCTAATCAGCAGCATTCCTCACCAATTCCTCCCACAATAGTTTATCAAGCACAAGCTGTTCCGCCAACAAATCAGTTCTCTGATCAACATATCAATGGTCAGAAGGGTGTTACTGTTGAAGCCATGGTCTTAGATTTTTTGCATCATCCCACAAACAGCTCAAGGAATGAGTGAGTCCATCGTGACCTTATTGCCAGCATCTTGGAATTTCTTTGGAAAAGCTAATGCTGGCTATTAAAAATCTTATTGATGAAGGTGCCGTTTATGAAACCATAGGTGATCACAATAAGTCAATCATCAATGGTTGATAACTTGTTGGATAAGTACAGTTTTTTGTTAGAGTATGCTAACTCTGCGTATCCATTCTAGTGATGTTACATGCACAAGCAAAACAATGTTCTGCTAGATTTTGGTGGTCTTGTTTTTCCATCTCATATTAAGAGTATGAACCGGTAATATGTAACAAAATATATTTAACATGATATGATATGTATCCGTTATGC

Coding sequences of Glyma17g07020

Limit To All Plant Sequences

>Glyma17g07020.1   sequence type=CDS   gene model=Glyma17g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTCAAGCGATGATAGAATCAATTTGATTGTTGATGGTGTGGACGTTACCAATGTCACTCTTGTAGGAAGGGTGTCCAACAAAACTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGAAGGATTGAGTGTAGTAAATGGCTTCATGAAGCTGTTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACAATTAAAACATTTTCAGCGTAAAAGGACCTTAACTGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCTAGTCATTTCAGCGATTGCATATATGTGCATCTCTACAATTCCAGATTAAGGTCTAGTGTCCCTAATCAGCAGCATTCCTCACCAATTCCTCCCACAATAGTTTATCAAGCACAAGCTGTTCCGCCAACAAATCAGTTCTCTGATCAACATATCAATGGTCAGAAGGGTGTTACTGTTGAAGCCATGGTCTTAGATTTTTTGCATCATCCCACAAACAGCTCAAGGAATGAGTGA

>Glyma17g07020.2   sequence type=CDS   gene model=Glyma17g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTCAAGCGATGATAGAATCAATTTGATTGTTGATGGTGTGGACGTTACCAATGTCACTCTTGTAGGAAGGGTGTCCAACAAAACTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGAAGGATTGAGTGTAGTAAATGGCTTCATGAAGCTGTTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACAATTAAAACATTTTCAGCGTAAAAGGACCTTAACTGTTTTCTCTTTTAGGCCTGTGACTGACTTTAATGAGATTGCTAGTCATTTCAGCGATTGCATATATGTGCATCTCTACAATTCCAGATTAAGGTCTAGTGTCCCTAATCAGCAGCATTCCTCACCAATTCCTCCCACAATAGTTTATCAAGCACAAGCTGTTCCGCCAACAAATCAGTTCTCTGATCAACATATCAATGGTCAGAAGGGTGTTACTGTTGAAGCCATGGTCTTAGATTTTTTGCATCATCCCACAAACAGCTCAAGGAATGAGTGA

Predicted protein sequences of Glyma17g07020

Limit To All Plant Sequences

>Glyma17g07020.1   sequence type=predicted peptide   gene model=Glyma17g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSSDDRINLIVDGVDVTNVTLVGRVSNKTGRITDVTFVLDDGTGRIECSKWLHEAVDTNEAEAILDGMYARLHGQLKHFQRKRTLTVFSFRPVTDFNEIASHFSDCIYVHLYNSRLRSSVPNQQHSSPIPPTIVYQAQAVPPTNQFSDQHINGQKGVTVEAMVLDFLHHPTNSSRNE*

>Glyma17g07020.2   sequence type=predicted peptide   gene model=Glyma17g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSSDDRINLIVDGVDVTNVTLVGRVSNKTGRITDVTFVLDDGTGRIECSKWLHEAVDTNEAEAILDGMYARLHGQLKHFQRKRTLTVFSFRPVTDFNEIASHFSDCIYVHLYNSRLRSSVPNQQHSSPIPPTIVYQAQAVPPTNQFSDQHINGQKGVTVEAMVLDFLHHPTNSSRNE*

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