Glyma17g07000 - SoyBase

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Report for Sequence Feature Glyma17g07000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5057474
stop:	5062715
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g07000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30200	AT	Annotation by Michelle Graham. TAIR10: vernalization5/VIN3-like \| chr4:14786852-14790070 REVERSE LENGTH=702	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048587	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of short-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0031519	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: PcG protein complex	SoyBase	N/A	ISS
GO:0035064	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding	SoyBase	N/A	ISS
PTHR21736	Panther	VERNALIZATION-INSENSITIVE PROTEIN 3	JGI		ISS
PTHR21736:SF13	Panther	VERNALIZATION-INSENSITIVE PROTEIN 3	JGI		ISS
PF00041	PFAM	Fibronectin type III domain	JGI		ISS
PF07227	PFAM	Protein of unknown function (DUF1423)	JGI		ISS
UniRef100_G7JVD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein VERNALIZATION INSENSITIVE n=1 Tax=Medicago truncatula RepID=G7JVD5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CEEF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CEEF related cluster n=1 Tax=unknown RepID=UPI000233CEEF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g07000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g07000

Paralog	Evidence	Comments
Glyma13g00920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g07000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g062500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g07000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g07000

Limit To All Plant Sequences

>Glyma17g07000.1   sequence type=CDS   gene model=Glyma17g07000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACAGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAAGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCGACAGACCCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCACACGTGCCTGTTCCTGCGACCAGCATTACAGTCAATAATGGTGGTGATTCTGTTAACACCGCATACTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCATATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCGGGAATTGCCAAGGATGGTGAGCATCCCAAGCTTGATGGAGGGTTCTACTGTGTCTCTTGCGGGAAAGTAAATGATTTACTTGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAGTGTATGAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCATTGGCTCACCGGTGAAGATTGGAAGGGGAATTGTGAACAGGCTTTCTTCTGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTACTTTCGAAAAGAATTTTGCCTTCGTCACCCAAGCCAACAACTCAAGATGCACATTTGCTGGCTCCAAATATGGTGAGGTTTGAAGACGTCACTGCCACAACCCTCACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAATTATTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACTACCCCACCGACCCAACTTGCACCTCGCTCCTACCAAATAGAAGGTTCCGTGTCTCGGGTCTAATTCCAGGCACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGCGAGGAAGAAGTCCCTAATTGCTCTGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGATCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCAACCAACTTGCTTCTGGAAATTTATCCAATGATGTTATTAACTGTTCCAATCTAGGCAGTGTGGGACTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGGAGGAACGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAACAAGTCACTGAGGACATGAGCACTGATGATGGGTTGAATTCCCCAGCTCTAACAGGGAGGGAATGTGTGCCGTTAGTAGGTAGCTCAAAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCGAGTGGCAAAGATCAAGAAAATGTATCCGGGAAAAGGGAGGGCCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTTGCAAATGGCTTTTCGGATCGGGATTTTGAGTATTATGTGAAGGTAATTAGGTGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACATCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA

Predicted protein sequences of Glyma17g07000

Limit To All Plant Sequences

>Glyma17g07000.1   sequence type=predicted peptide   gene model=Glyma17g07000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHVPVPATSITVNNGGDSVNTAYCKNSACKATLNQSYAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIAKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEVYEELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPSSPKPTTQDAHLLAPNMVRFEDVTATTLTIILGSEEPSGEIIAGYTLWHRKVDDVDYPTDPTCTSLLPNRRFRVSGLIPGTEYSFKVVSNDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSNQLASGNLSNDVINCSNLGSVGLPPDADSLSDKQHAGGTTASIPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSKGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH*

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