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Report for Sequence Feature Glyma17g06910

Feature Type:gene_model
Chromosome:Gm17
Start:4965903
stop:4967626
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g06910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57345AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23229562-23230587 REVERSE LENGTH=188 SoyBaseE_val: 8.00E-54ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07466PFAM Protein of unknown function (DUF1517) JGI ISS
UniRef100_C6T642UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T642_SOYBN SoyBaseE_val: 1.00E-123ISS

Expression Patterns of Glyma17g06910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06910
ParalogEvidenceComments
Glyma13g00820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g061600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g06910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g06910
>Glyma17g06910.1   sequence type=CDS   gene model=Glyma17g06910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTAGCACTAGCATTAGCATAGCTTCCTCACACCAAAGCTTTCTCACCAACGCCCTTATTCCACCAAAGTTCAGGACCACCAGGATTAGTATTGTTTCTTGCAGTTCCCCACAACAATCTCCAAGGAAGAAGAATAATGAGAACAAGTTGGCAAAGTTAGCAATGGTTGCAGTTGCTGTTGGGGTGCTAACACTTGGGTCAGTTCATGATGCATCAGCTGCCAAGACTGGTGGTAGAATTGGTGGCCAGGCCTTCAAGTCAGCAGCTCCACGCTCCGCACCAAGAATCAACAATTCCAGGACCAACATCTATATCAATCCTCGAGTGGCACCTCCGCTTGTTGGTGGCTATGGCTATGGTTATGGTGGCTGGGGATGGTCTCCATTTTCATTCTTTGCACCAGGTCCCAGTGTAGCTGTAGGCGTTGGAGGTGGATTTGACACTATTCTTCTGTTTATGTTTCTTGGTGTTGCTGCTGCAGTTGTGAGGAGATTCTTTGGGTCAAGAAATGAAGATGATGACTACTAG
Predicted protein sequences of Glyma17g06910
>Glyma17g06910.1   sequence type=predicted peptide   gene model=Glyma17g06910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCSTSISIASSHQSFLTNALIPPKFRTTRISIVSCSSPQQSPRKKNNENKLAKLAMVAVAVGVLTLGSVHDASAAKTGGRIGGQAFKSAAPRSAPRINNSRTNIYINPRVAPPLVGGYGYGYGGWGWSPFSFFAPGPSVAVGVGGGFDTILLFMFLGVAAAVVRRFFGSRNEDDDY*






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