Glyma17g06880 - SoyBase

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Report for Sequence Feature Glyma17g06880

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4937614
stop:	4944773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57330	AT	Annotation by Michelle Graham. TAIR10: Galactose mutarotase-like superfamily protein \| chr5:23218392-23220664 FORWARD LENGTH=312	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004034	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldose 1-epimerase activity	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1594	KOG	Uncharacterized enzymes related to aldose 1-epimerase	JGI		ISS
PTHR11122	Panther	APOSPORY-ASSOCIATED PROTEIN C-RELATED	JGI		ISS
PF01263	PFAM	Aldose 1-epimerase	JGI		ISS
UniRef100_I1MSN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSN9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S3Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Apospory-associated protein C n=1 Tax=Oryza sativa Japonica Group RepID=Q8S3Q3_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06880

Paralog	Evidence	Comments
Glyma13g00780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g061300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g06880

Limit To All Plant Sequences

>Glyma17g06880.2   sequence type=transcript   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTTCGGAAAACGAGAAGAGAGAGAGAAAGACAAATAGAAGAAGCTGCATTTGCAGAGACGCCCTGAGAGAGAGAATTGGAAGGTTGCGACGAGTGATGATATACACATATTGTGACGGTAGTGAAATCGAGGAAAAAGAGGTAGCAATTTGCGAGTTGCAATGAGTAACGAAAAGGCTCCTTCATCAGCTTCTTCGAGTAGCTACGAGTTGAGCAAAGGCATCAATGGCCTCGACAAGGTTATTCTTCGCGACGCACGTGGTAGCTCCGCTGAGGTGTACTTGTACGGTGCTCACGTGACTTCATGGAAGAATGACCATGCCGAGGAATTGCTTTTTCTCAGTAGTAAGGCTATCTTTAAGCCTCCAAAGCCAATTCGTGGAGGGATTCCAATATGTTTTCCTCAATTTTCAAACCTCGGTCCTCTCGACTCACATGGATTTGCTAGAAACCAATTCTGGACAATTGATGATTCCCCTCCTCCTTTTCCAACAAGTACTTCGAATAAAGCCTTTGTTGATTTGATTCTTAAACCCTCAGAAGACGACATCAAGATTTGGCCTCACAGTTTTGAATTTCGTCTTAGGGTAGCTCTTGGACCTGGAGGAGATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGTGAAGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAAGATATATCTCAGCACTCCTACAAAGATTGCAATTCTTGATCATGAGAAAAAGAGAACAATTGTATTGCGTAAAGATGGTCTTCCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGGCTATATCTGATTTCGGTGATGATGAGTATAAGTACATGCTTTGTGTAGAGGCTGCTGCTATTGAAAAGCCTATCACTTTGAAACCTGGTGAGGAATGGAAGGGAAGACTAGAACTTTCAACTGTTTCTTCTAGTTATTGTAGTGGACAGCTTGATCCCAAAAGAGTTATTCAAGGAAGCTGAAAGATCATCGTTGTGTTTTGTGTCCTGTACAGGTAGCTTGTTGCCACCACGATGAACGTTGAAAGGAAAGTGTCTCCAACAATTTCCCCCCTTCATGTTCCACTTAAACCTTCTTCATGTTGGACGGATGAACTCATGTATAGAGTTTTGTTAAATAATATTTTCCTGTAACGGATGACTAGTTCGGTCATAATTGACGTATAAGTAGAATAGCCTTCAGTTGTTTATGGAAAATCAAACTAAAATCTCAAATTTTATTTGATTTTCACGTTGGGTTCTCGTACTCATATGAAATGTTTATTATCACATATCATAGGCAATGAATGCATGTATTTGACAGGATCGTTTTACAACACTACAATTTGGCCTGTATGTCGTAAGTTGTTGCCGCTATCTACATTTTCAAGTAATGAATATAATTATTAAATATATAATTGTTATCT

>Glyma17g06880.3   sequence type=transcript   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAAGACAAATAGAAGAAGCTGCATTTGCAGAGACGCCCTGAGAGAGAGAATTGGAAGGTTGCGACGAGTGATGATATACACATATTGTGACGGTAGTGAAATCGAGGAAAAAGAGGTAGCAATTTGCGAGTTGCAATGAGTAACGAAAAGGCTCCTTCATCAGCTTCTTCGAGTAGCTACGAGTTGAGCAAAGGCATCAATGGCCTCGACAAGGTTATTCTTCGCGACGCACGTGGTAGCTCCGCTGAGGTGTACTTGTACGGTGCTCACGTGACTTCATGGAAGAATGACCATGCCGAGGAATTGCTTTTTCTCAGTAGTAAGTTTTCAAACCTCGGTCCTCTCGACTCACATGGATTTGCTAGAAACCAATTCTGGACAATTGATGATTCCCCTCCTCCTTTTCCAACAAGTACTTCGAATAAAGCCTTTGTTGATTTGATTCTTAAACCCTCAGAAGACGACATCAAGATTTGGCCTCACAGTTTTGAATTTCGTCTTAGGGTAGCTCTTGGACCTGGAGGAGATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGTGAAGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAATTTGACAGGATATATCTCAGCACTCCTACAAAGATTGCAATTCTTGATCATGAGAAAAAGAGAACAATTGTATTGCGTAAAGATGGTCTTCCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGGCTATATCTGATTTCGGTGATGATGAGTATAAGTACATGCTTTGTGTAGAGGCTGCTGCTATTGAAAAGCCTATCACTTTGAAACCTGGTGAGGAATGGAAGGGAAGACTAGAACTTTCAACTGTTTCTTCTAGTTATTGTAGTGGACAGCTTGATCCCAAAAGAGTTATTCAAGGAAGCTGAAAGATCATCGTTGTGTTTTGTGTCCTGTACAGGTAGCTTGTTGCCACCACGATGAACGTTGAAAGGAAAGTGTCTCCAACAATTTCCCCCCTTCATGTTCCACTTAAACCTTCTTCATGTTGGACGGATGAACTCATGTATAGAGTTTTGTTAAATAATATTTTCCTGTAACGGATGACTAGTTCGGTCATAATTGACGTATAAGTAGAATAGCCTTCAGTTGTTTATGGAAAATCAAACTAAAATCTCAAATTTTATTTGATTTTCACGTTGGGTTCTCGTACTCATATGAAATGTTTATTATCACATATCATAGGCAATGAATGCATGTATTTGACAGGATCGTTTTACAACACTACAATTTGGCCTGTATGTCGTAAGTTGTTGCCGCTATCTACATTTTCAAGTAATGAATATAATTATTAAATAT

Coding sequences of Glyma17g06880

Limit To All Plant Sequences

>Glyma17g06880.1   sequence type=CDS   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAAAAGGCTCCTTCATCAGCTTCTTCGAGTAGCTACGAGTTGAGCAAAGGCATCAATGGCCTCGACAAGGTTATTCTTCGCGACGCACGTGGTAGCTCCGCTGAGGTGTACTTGTACGGTGCTCACGTGACTTCATGGAAGAATGACCATGCCGAGGAATTGCTTTTTCTCAGTAGTAAGGCTATCTTTAAGCCTCCAAAGCCAATTCGTGGAGGGATTCCAATATGTTTTCCTCAATTTTCAAACCTCGGTCCTCTCGACTCACATGGATTTGCTAGAAACCAATTCTGGACAATTGATGATTCCCCTCCTCCTTTTCCAACAAGTACTTCGAATAAAGCCTTTGTTGATTTGATTCTTAAACCCTCAGAAGACGACATCAAGATTTGGCCTCACAGTTTTGAATTTCGTCTTAGGGTAGCTCTTGGACCTGGAGGAGATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGTGAAGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAATTTGACAGGATATATCTCAGCACTCCTACAAAGATTGCAATTCTTGATCATGAGAAAAAGAGAACAATTGTATTGCGTAAAGATGGTCTTCCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGGCTATATCTGATTTCGGTGATGATGAGTATAAGTACATGCTTTGTGTAGAGGCTGCTGCTATTGAAAAGCCTATCACTTTGAAACCTGGTGAGGAATGGAAGGGAAGACTAGAACTTTCAACTGTTTCTTCTAGTTATTGTAGTGGACAGCTTGATCCCAAAAGAGTTATTCAAGGAAGCTGA

>Glyma17g06880.2   sequence type=CDS   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAAAAGGCTCCTTCATCAGCTTCTTCGAGTAGCTACGAGTTGAGCAAAGGCATCAATGGCCTCGACAAGGTTATTCTTCGCGACGCACGTGGTAGCTCCGCTGAGGTGTACTTGTACGGTGCTCACGTGACTTCATGGAAGAATGACCATGCCGAGGAATTGCTTTTTCTCAGTAGTAAGGCTATCTTTAAGCCTCCAAAGCCAATTCGTGGAGGGATTCCAATATGTTTTCCTCAATTTTCAAACCTCGGTCCTCTCGACTCACATGGATTTGCTAGAAACCAATTCTGGACAATTGATGATTCCCCTCCTCCTTTTCCAACAAGTACTTCGAATAAAGCCTTTGTTGATTTGATTCTTAAACCCTCAGAAGACGACATCAAGATTTGGCCTCACAGTTTTGAATTTCGTCTTAGGGTAGCTCTTGGACCTGGAGGAGATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGTGAAGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAAGATATATCTCAGCACTCCTACAAAGATTGCAATTCTTGA

>Glyma17g06880.3   sequence type=CDS   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAACGAAAAGGCTCCTTCATCAGCTTCTTCGAGTAGCTACGAGTTGAGCAAAGGCATCAATGGCCTCGACAAGGTTATTCTTCGCGACGCACGTGGTAGCTCCGCTGAGGTGTACTTGTACGGTGCTCACGTGACTTCATGGAAGAATGACCATGCCGAGGAATTGCTTTTTCTCAGTAGTAAGTTTTCAAACCTCGGTCCTCTCGACTCACATGGATTTGCTAGAAACCAATTCTGGACAATTGATGATTCCCCTCCTCCTTTTCCAACAAGTACTTCGAATAAAGCCTTTGTTGATTTGATTCTTAAACCCTCAGAAGACGACATCAAGATTTGGCCTCACAGTTTTGAATTTCGTCTTAGGGTAGCTCTTGGACCTGGAGGAGATCTGTTGATGACATCTCGGATCAGGAACACTAACATTGATGGGAAGCCATTTTCATTCACATTTGCTTATCATACATATTTCTCTGTGTCAGATATAAGTGAAGTGCGGGTTGAAGGATTAGAGACATTGGATTATCTTGACAACTTGCAGAAAAGGGAACGCTTTACTGAACAGGGGGATGCTTTAACATTTGAATCAGAATTTGACAGGATATATCTCAGCACTCCTACAAAGATTGCAATTCTTGATCATGAGAAAAAGAGAACAATTGTATTGCGTAAAGATGGTCTTCCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGGCTATATCTGATTTCGGTGATGATGAGTATAAGTACATGCTTTGTGTAGAGGCTGCTGCTATTGAAAAGCCTATCACTTTGAAACCTGGTGAGGAATGGAAGGGAAGACTAGAACTTTCAACTGTTTCTTCTAGTTATTGTAGTGGACAGCTTGATCCCAAAAGAGTTATTCAAGGAAGCTGA

Predicted protein sequences of Glyma17g06880

Limit To All Plant Sequences

>Glyma17g06880.1   sequence type=predicted peptide   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEKAPSSASSSSYELSKGINGLDKVILRDARGSSAEVYLYGAHVTSWKNDHAEELLFLSSKAIFKPPKPIRGGIPICFPQFSNLGPLDSHGFARNQFWTIDDSPPPFPTSTSNKAFVDLILKPSEDDIKIWPHSFEFRLRVALGPGGDLLMTSRIRNTNIDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQKRERFTEQGDALTFESEFDRIYLSTPTKIAILDHEKKRTIVLRKDGLPDAVVWNPWDKKAKAISDFGDDEYKYMLCVEAAAIEKPITLKPGEEWKGRLELSTVSSSYCSGQLDPKRVIQGS*

>Glyma17g06880.2   sequence type=predicted peptide   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEKAPSSASSSSYELSKGINGLDKVILRDARGSSAEVYLYGAHVTSWKNDHAEELLFLSSKAIFKPPKPIRGGIPICFPQFSNLGPLDSHGFARNQFWTIDDSPPPFPTSTSNKAFVDLILKPSEDDIKIWPHSFEFRLRVALGPGGDLLMTSRIRNTNIDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQKRERFTEQGDALTFESEDISQHSYKDCNS*

>Glyma17g06880.3   sequence type=predicted peptide   gene model=Glyma17g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNEKAPSSASSSSYELSKGINGLDKVILRDARGSSAEVYLYGAHVTSWKNDHAEELLFLSSKFSNLGPLDSHGFARNQFWTIDDSPPPFPTSTSNKAFVDLILKPSEDDIKIWPHSFEFRLRVALGPGGDLLMTSRIRNTNIDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQKRERFTEQGDALTFESEFDRIYLSTPTKIAILDHEKKRTIVLRKDGLPDAVVWNPWDKKAKAISDFGDDEYKYMLCVEAAAIEKPITLKPGEEWKGRLELSTVSSSYCSGQLDPKRVIQGS*

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