Glyma17g06850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g06850

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4917756
stop:	4919922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19070	AT	Annotation by Michelle Graham. TAIR10: spermidine hydroxycinnamoyl transferase \| chr2:8260185-8261958 REVERSE LENGTH=451	SoyBase	E_val: 0	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0080088	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine hydroxycinnamate conjugate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016410	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acyltransferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
GO:0050734	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxycinnamoyltransferase activity	SoyBase	N/A	ISS
GO:0080072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:sinapoyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080073	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:coumaroyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080074	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:caffeoyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
GO:0080075	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine:feruloyl CoA N-acyltransferase activity	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_H9NEK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyltransferase 2 n=1 Tax=Pyrus x bretschneideri RepID=H9NEK9_9ROSA	SoyBase	E_val: 0	ISS
UniRef100_I1MSN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MSN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g06850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g061000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g06850

Limit To All Plant Sequences

>Glyma17g06850.1   sequence type=CDS   gene model=Glyma17g06850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCAGTAACCTACAAAGGCTGCTACACCGTAAGGCCTATGGAACCAACAAAGTGTGAACGCGTACCTTTATCTGAATGGGATCAAATAGGCACCATAACTCACGTTCCCACAATCTACTTCTACCGTCCCACCTCACAAGACAAAGACAACGTTAACACCGTTGCTTCCACCTTGAAAGACGCATTAAGCAGAGCCCTAGTGCCGTTTTATCCACTAGCTGGTCGTTTACATTGGATAAACAAGGGTCGTTTAGAGCTTGATTGCAACGCCATGGGGGTTCATTTCATTGAAGCTGAATCCTCACTAACCCTAGAAAATCTCGGTGACTTTTCACCCTCTTCAGAATACAACAACCTTGTCCCCAACGTAGACTACACCCTCCCAATTCACGAGCTACCCGTGGTTCTCATTCAACTAACTAACTTCAAGTGTGGTGGTTTTAGCATTAGCTTAAATACTTCACATGCTGTTGCGGATGGACCAAGTGCATTGCACTTCTTGTGTGAGTGGGCAAGGCTTTCACGCGGTGAGCTTCTTCAAACGGCGCCGTTATTCGACCGGACCGTGTTTCGTGCCGGAGAGCCTCCTCTGATGCCACTAACGGAGTGTCGCGTTCACAAGGATCAGTTCATTCACCCTCCGTTGTTGCTCGGCCAAACCAACAACACAGAAGAAAGGAAGAAAAAAACCACAGTGGTTATTCTCAAACTGACCAAAACACAAGTTGAGACACTGAAAAAGACAGCGAATGAGAGTAACAGTGGTCATGCACGTTGTTACACTCGTTATGAGAGTGTGACTGGTCATGTGTGGAGAACTGCATGCAAGGCAAGAGGGCACAAAGAGGACCAACCAACCGCGCTAGGTGTTTGTGTTGACTCGAGGAGTCGCATGGAACCTCCTTTGCCAAAAGGATATTTTGGGAATGCAACTTTGGACACTGTTGCTACTAGCCTTGCTGGTGATTTGGTGTCAAAGCCATTAGGGTATGCGTGTAGTAGAATAAGAGAGGCGATTGAGAGGGTTACTGATGAGTACGTTAGGACGGGGATTGAGTTCTTGAAGAATCAAGAGGATTTGAGTAGGTTTCAAGATCTATATGCAATAGGGAGTGAGAAGGGTCCTTTCTATGGGAACCCTAATCTTGGTGTGGTTAGTTGGTTAACGTTGCCTATCTATGGCGTTGATTTTGGGTGGGGGAAGGAGGTTTATATGGGTCCGGGGACACATGACTTCGATGGAGATTCTTTGCTTCTTCCTGGTCCAGATGGGGAGGGGTCTGTGCTGCTTGCTTTGTGTCTTCAAGTGCCGCATATGGATACGTTTAAGAAGCATTTTTATCAAGACATTAATGTGTCAGAATCATGCCAAGATTGA

Predicted protein sequences of Glyma17g06850

Limit To All Plant Sequences

>Glyma17g06850.1   sequence type=predicted peptide   gene model=Glyma17g06850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVTYKGCYTVRPMEPTKCERVPLSEWDQIGTITHVPTIYFYRPTSQDKDNVNTVASTLKDALSRALVPFYPLAGRLHWINKGRLELDCNAMGVHFIEAESSLTLENLGDFSPSSEYNNLVPNVDYTLPIHELPVVLIQLTNFKCGGFSISLNTSHAVADGPSALHFLCEWARLSRGELLQTAPLFDRTVFRAGEPPLMPLTECRVHKDQFIHPPLLLGQTNNTEERKKKTTVVILKLTKTQVETLKKTANESNSGHARCYTRYESVTGHVWRTACKARGHKEDQPTALGVCVDSRSRMEPPLPKGYFGNATLDTVATSLAGDLVSKPLGYACSRIREAIERVTDEYVRTGIEFLKNQEDLSRFQDLYAIGSEKGPFYGNPNLGVVSWLTLPIYGVDFGWGKEVYMGPGTHDFDGDSLLLPGPDGEGSVLLALCLQVPHMDTFKKHFYQDINVSESCQD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain