Glyma17g06830 - SoyBase

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Report for Sequence Feature Glyma17g06830

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4903489
stop:	4907262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25880	AT	Annotation by Michelle Graham. TAIR10: pumilio 6 \| chr4:13155518-13159078 FORWARD LENGTH=861	SoyBase	E_val: 1.00E-119	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003729	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA binding	SoyBase	N/A	ISS
PTHR12537	Panther	RNA BINDING PROTEIN PUMILIO-RELATED	JGI		ISS
PTHR12537:SF12	Panther	PUMILIO	JGI		ISS
PF00806	PFAM	Pumilio-family RNA binding repeat	JGI		ISS
UniRef100_G7IN26	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pumilio-like protein n=1 Tax=Medicago truncatula RepID=G7IN26_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BAE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BAE6 related cluster n=1 Tax=unknown RepID=UPI000233BAE6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06830

Paralog	Evidence	Comments
Glyma13g00670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g060800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g06830

Limit To All Plant Sequences

>Glyma17g06830.2   sequence type=CDS   gene model=Glyma17g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGAGAATCCAATTAGAATCTCTGAAGCTGGGAGTAAATGGCCGTTTCATGGTCGTGGAAAGGATGTGGTACCCAACAGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTGGCCATAGAAAGCTTGTTATCCCAGAACACCACCTGGAATGCGAGCTTGGGATCTCTGAACAGAGATATGCAAAAAGATGATAGTGGTAAAGGGTCTTTATATTTGTCACGAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATTATTCAACCCAACAGATGTATGATAATGAGTTAGACAAAGCTATTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCATCTCAGCACACACATTTAGTAATGGAAGATTTTCCCCATAACATGTCACCTGTATATAATAAGTTTCTTGGAGTGGTGGATGAACTAATTGGCATAGATACTGGTTCCAGTTCTTCTCATGGTCCTCCTGTCACTACAGTGGATGCTGTAAAACCTACCATAGGTGCAGATGATATAAGACTGTCATCAACTGTTGATTCCCCTGCCCCAGTCACAAGTTCATCATCTCTAAATTCCACTGGAAGCATGGGTTTTAATGACTTACATGTTACAATTGTAGAATCACAATTAAGGGCTCTCAGTGTATCTAATCTACCAAATTCAGAAAGTCGGAGTTATGAAGATAAATGGGAGAACAGCTTCCAGAATAATTTGATGCAACACCAGCTACAAAACTATCCATGTGAAGTGCCTAGCACCAATTCTCAAAGTGAAAAATGCACATATGTTGGTATGGAGCAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTACAGCCTGTACTGCAATCATCAGGATATACACCTCCACTATATGCTACAGCAGCTGCTTATATGACCTCAGTAAATTCGTTTTACACTAATTTTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGACGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGGGTTTCTTCTACTGCAGGAAACAATTCACACGGAGCTGAAATGATGCATGCAATCAAGTTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCTATTTTCATGCAATATCATCAACAACCTTTTGCGGAGGGATATGGTGTATCTGGTCATCTGCTGGCTCCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTTTGATTCCCAAAAAAGGCCCAGTAGTGGTGGGCTAATACACCCTGGTTATTTTGGACACCCTTCAAATTTGGGTTTCGTACCCCAGTATCCAAGTTCTCCACTTTCTAGACCAGTTTTATCAGGATACCCAGAAAGTAGAAATGGAGGTTTATTATCTGGATGGCAAGCTCAAAGAGCATTTGACAGTGCTCACAACCCCAAAATTGCTATTTTTCTTGAATACACTGCTCAGCATGGGAGCTGTTTTATACAGCAGAAGTTGGAAAGCTGCTGTGTTAAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCAAAATTAATGACTGATGTATTTGGAAACTATGTAATCCAAAAGTTTTTTGAGTATGGAAGTCCTGAGCAGAGAAAGGAACTTGCAAATCGACTTCTTTGTCAGATACCGCCTTTAGGTCTGCAGATGTATGGCTGTTGTGTAGTCCAAAAGGCACTTGAGGCTATCGATCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTACGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCAATTCCAACTAAAAACATTGACTTTATAATATTTGCATTTCGTGGTGAAATTGTTATTCTATCTATGCATCCATATGGGTGCCGA

Predicted protein sequences of Glyma17g06830

Limit To All Plant Sequences

>Glyma17g06830.2   sequence type=predicted peptide   gene model=Glyma17g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATENPIRISEAGSKWPFHGRGKDVVPNSSGSAPPSMEGSFLAIESLLSQNTTWNASLGSLNRDMQKDDSGKGSLYLSRGTLATHKEESEDYSTQQMYDNELDKAIGKWHRQDVASTSSQHTHLVMEDFPHNMSPVYNKFLGVVDELIGIDTGSSSSHGPPVTTVDAVKPTIGADDIRLSSTVDSPAPVTSSSSLNSTGSMGFNDLHVTIVESQLRALSVSNLPNSESRSYEDKWENSFQNNLMQHQLQNYPCEVPSTNSQSEKCTYVGMEQFLHNPSKFSSDVQPVLQSSGYTPPLYATAAAYMTSVNSFYTNFPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAPGVSSTAGNNSHGAEMMHAIKFFGQFGFPLQPSFGDPIFMQYHQQPFAEGYGVSGHLLAPRASVGGQIGPFDSQKRPSSGGLIHPGYFGHPSNLGFVPQYPSSPLSRPVLSGYPESRNGGLLSGWQAQRAFDSAHNPKIAIFLEYTAQHGSCFIQQKLESCCVKEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLCQIPPLGLQMYGCCVVQKALEAIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIIFAFRGEIVILSMHPYGCR

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