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Report for Sequence Feature Glyma17g06750
Feature Type: gene_model
Chromosome: Gm17
Start: 4812402
stop: 4818557
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g06750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G25850 AT
Annotation by Michelle Graham. TAIR10: OSBP(oxysterol binding protein)-related protein 4B | chr4:13143859-13146654 FORWARD LENGTH=383
SoyBase E_val: 9.00E-142 ISS
GO:0008202 GO-bp
Annotation by Michelle Graham. GO Biological Process: steroid metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008142 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxysterol binding
SoyBase N/A ISS
KOG2210
KOG
Oxysterol-binding protein
JGI ISS
PTHR10972 Panther
OXYSTEROL-BINDING PROTEIN
JGI ISS
PTHR10972:SF27 Panther
OXYSTEROL BINDING PROTEIN
JGI ISS
PF01237 PFAM
Oxysterol-binding protein
JGI ISS
UniRef100_I1MSM2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSM2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HUM2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oxysterol-binding protein n=2 Tax=Medicago truncatula RepID=Q2HUM2_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g06750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g06750
Paralog Evidence Comments
Glyma13g00590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g06750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g059900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g06750
Transcripts of Glyma17g06750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g06750.3 sequence type=transcript gene model=Glyma17g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATCTCTCTTCCAACTCCCAAGTTCCAAATCTGTGCAAACAGCCAAATGCTACAGACTACTAGAACTGAAATATTTTTTTCGAAAATGGGTAAACAATTAATGGAAAAACGCAACCCATGTATATATATATATATATATATATAGACGCTCAATTGTGCCATGTCCATCACATTTCTGTAGCTCTATGGCCGAAATGATACAGTTTGTTTCCTTATTCTAAACCCCAAAGTAGCAATAGTTAGATTAGAGTACATAGTTTTTGTCACACCTCACTTCTCTCCGATTTGCGCTTGTTCTTCTTCTTGGTCAACTCGATCGTAAGTCGTAGAACTAGAAGGTACGTCCTTAATTTGTTTCTCAACAATTTCCATGTGTGTGCACCCGATCCATATCATAGATGAAATAATTACATGTACTGTTTTCGATTCAAATAGGTTTTGATTCTTTATAAGTTTTCCGGCGTCTTAAGAGGGCGGTTTTAGTGTTGGTGACCGCCAAATGAGTGGGTGAGGGCAATATGGAGGTAACAAAAGGGAAGGAAACTAAAATTGTTTTGACGAAACCCTTCCAATTGGAAGCTGAATCAGATTTAGAACCGTCTTATAGAGCCCCCCATCTCCTACATCGCTTGTTAAGTTTACTCAAGAACGTGCGGCCAGGATCAGATCTCACAAACTTCCAACTGCCGCCTGTGTTTAATTTCCCAAAATCTCAACTTCAATGCTATGGTGAATCAGTGTACTGCACATCTTCCAACTTGCTAAGCCAATGCAACAGTGGGCAGAGTCCACTGGACAGGTTCACATCAGTAGTAGCATGGAGCATATCTACCACACGCCCCACATCTTTTGGTGTTGCTCCTTATAATTCCACTCTTGGAGAGACCCACCATGTTTCCAAGGGCAATCTCAACGTCCTAGTTGAGCAGGTTTCACTCAATCCTCCAGTATCTGCCCTCCATGCAACAGATGAGAAGGAAAACATTGAGATGATATGGTGCCAGCAGCCTGTTCCAAAGTTTCGGGGTACATCTATTGAAGCTCAAGTGCATGGTAAACGGCTGCTGAAGCTCCAAAATCATGGAGAAACATATGAAATGAATTCTCCTCACCTTTCAATTAGAATTCTTCCGGTTCCTGGGATTGATTGGGTTGGCAATGTTAATATAAGGTGCCCAGAGACAGGTCTGGTAGCTGAAATATCATACAGATCAAGCCATTCTTTTTTAGGATTTGGGGGAAGTCGTAAATTGATCAAAGGGAAAATCCTTGACTCATCATTACTCAAAGTTCTCTTCGAAGTTGATGGTCATTGGGATAAGATAGTTAGAGTGAAGGATACAAATAGTGGAGAAGTGAGAGTGATATATGATGCCAAAGAAGCCATTTCAGGTCTCAAAACTCCTATTATCAAGGATGTGGAGAGTGTGTGGCCAACCGAATCAGCCCTTGTTTGGAGTGAGTTGAGCCAAGCCATTATGAACAAAGATTGGGAAAGAGCAAGAGAAGCAAAGCAAGACGTGGAAGAAAGACAGAGGAATATGTTGAGAGACAGAGCCATGAAAGGAGAAACTTGGTTTCCTAAGAATTTTAGGGTGTCTTACAGTAAAGACACATGGGAATGGGACTGTTCACCAACTCATAAATGGGTCCCTGAGGCCCCCATCATAGCTCAATAATTTATTGTTATGTACTTTGTACTGTGATGTCTTTAAATACCAGCCAAAACACAGTTATAGGCTGTTCAAAAATTGAAATGCACTTATTTCTGGTTGGACACCAAAAGGGTTGGAAGATTTATTGTTGTACTCATGAAATTCATTTAAACCTAAGTTATTTATTATTTTTAATTTTTGATAAATATTGAGATAGTTTGATGAATAAATT
Coding sequences of Glyma17g06750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g06750.2 sequence type=CDS gene model=Glyma17g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGTAACAAAAGGGAAGGAAACTAAAATTGTTTTGACGAAACCCTTCCAATTGGAAGCTGAATCAGATTTAGAACCGTCTTATAGAGCCCCCCATCTCCTACATCGCTTGTTAAGTTTACTCAAGAACGTGCGGCCAGGATCAGATCTCACAAACTTCCAACTGCCGCCTGTGTTTAATTTCCCAAAATCTCAACTTCAATGCTATGGTGAATCAGTGTACTGCACATCTTCCAACTTGCTAAGCCAATGCAACAGTGGGCAGAGTCCACTGGACAGGTTCACATCAGTAGTAGCATGGAGCATATCTACCACACGCCCCACATCTTTTGGTGTTGCTCCTTATAATTCCACTCTTGGAGAGACCCACCATGTTTCCAAGGGCAATCTCAACGTCCTAGTTGAGCAGGTTTCACTCAATCCTCCAGTATCTGCCCTCCATGCAACAGATGAGAAGGAAAACATTGAGATGATATGGTGCCAGCAGCCTGTTCCAAAGTTTCGGGGTACATCTATTGAAGCTCAAGTGCATGGTAAACGGCTGCTGAAGCTCCAAAATCATGGAGAAACATATGAAATGAATTCTCCTCACCTTTCAATTAGAATTCTTCCGGTTCCTGGGATTGATTGGGTTGGCAATGTTAATATAAGGTGCCCAGAGACAGGTCTGGTAGCTGAAATATCATACAGATCAAGCCATTCTTTTTTAGGATTTGGGGGAAGTCGTAAATTGATCAAAGGGAAAATCCTTGACTCATCATTACTCAAAGTTCTCTTCGAAGTTGATGGTCATTGGGATAAGATAGTTAGAGTGAAGGATACAAATAGTGGAGAAGTGAGAGTGATATATGATGCCAAAGAAGCCATTTCAGGTCTCAAAACTCCTATTATCAAGGATGTGGAGAGTGTGTGGCCAACCGAATCAGCCCTTGTTTGGAGTGAGTTGAGCCAAGCCATTATGAACAAAGATTGGGAAAGAGCAAGAGAAGCAAAGCAAGACGTGGAAGAAAGACAGAGGAATATGTTGAGAGACAGAGCCATGAAAGGAGAAACTTGGTTTCCTAAGAATTTTAGGGTGTCTTACAGTAAAGACACATGGGAATGGGACTGTTCACCAACTCATAAATGGGTCCCTGAGGCCCCCATCATAGCTCAATAA
>Glyma17g06750.3 sequence type=CDS gene model=Glyma17g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGTAACAAAAGGGAAGGAAACTAAAATTGTTTTGACGAAACCCTTCCAATTGGAAGCTGAATCAGATTTAGAACCGTCTTATAGAGCCCCCCATCTCCTACATCGCTTGTTAAGTTTACTCAAGAACGTGCGGCCAGGATCAGATCTCACAAACTTCCAACTGCCGCCTGTGTTTAATTTCCCAAAATCTCAACTTCAATGCTATGGTGAATCAGTGTACTGCACATCTTCCAACTTGCTAAGCCAATGCAACAGTGGGCAGAGTCCACTGGACAGGTTCACATCAGTAGTAGCATGGAGCATATCTACCACACGCCCCACATCTTTTGGTGTTGCTCCTTATAATTCCACTCTTGGAGAGACCCACCATGTTTCCAAGGGCAATCTCAACGTCCTAGTTGAGCAGGTTTCACTCAATCCTCCAGTATCTGCCCTCCATGCAACAGATGAGAAGGAAAACATTGAGATGATATGGTGCCAGCAGCCTGTTCCAAAGTTTCGGGGTACATCTATTGAAGCTCAAGTGCATGGTAAACGGCTGCTGAAGCTCCAAAATCATGGAGAAACATATGAAATGAATTCTCCTCACCTTTCAATTAGAATTCTTCCGGTTCCTGGGATTGATTGGGTTGGCAATGTTAATATAAGGTGCCCAGAGACAGGTCTGGTAGCTGAAATATCATACAGATCAAGCCATTCTTTTTTAGGATTTGGGGGAAGTCGTAAATTGATCAAAGGGAAAATCCTTGACTCATCATTACTCAAAGTTCTCTTCGAAGTTGATGGTCATTGGGATAAGATAGTTAGAGTGAAGGATACAAATAGTGGAGAAGTGAGAGTGATATATGATGCCAAAGAAGCCATTTCAGGTCTCAAAACTCCTATTATCAAGGATGTGGAGAGTGTGTGGCCAACCGAATCAGCCCTTGTTTGGAGTGAGTTGAGCCAAGCCATTATGAACAAAGATTGGGAAAGAGCAAGAGAAGCAAAGCAAGACGTGGAAGAAAGACAGAGGAATATGTTGAGAGACAGAGCCATGAAAGGAGAAACTTGGTTTCCTAAGAATTTTAGGGTGTCTTACAGTAAAGACACATGGGAATGGGACTGTTCACCAACTCATAAATGGGTCCCTGAGGCCCCCATCATAGCTCAATAA
Predicted protein sequences of Glyma17g06750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g06750.2 sequence type=predicted peptide gene model=Glyma17g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEVTKGKETKIVLTKPFQLEAESDLEPSYRAPHLLHRLLSLLKNVRPGSDLTNFQLPPVFNFPKSQLQCYGESVYCTSSNLLSQCNSGQSPLDRFTSVVAWSISTTRPTSFGVAPYNSTLGETHHVSKGNLNVLVEQVSLNPPVSALHATDEKENIEMIWCQQPVPKFRGTSIEAQVHGKRLLKLQNHGETYEMNSPHLSIRILPVPGIDWVGNVNIRCPETGLVAEISYRSSHSFLGFGGSRKLIKGKILDSSLLKVLFEVDGHWDKIVRVKDTNSGEVRVIYDAKEAISGLKTPIIKDVESVWPTESALVWSELSQAIMNKDWERAREAKQDVEERQRNMLRDRAMKGETWFPKNFRVSYSKDTWEWDCSPTHKWVPEAPIIAQ*
>Glyma17g06750.3 sequence type=predicted peptide gene model=Glyma17g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEVTKGKETKIVLTKPFQLEAESDLEPSYRAPHLLHRLLSLLKNVRPGSDLTNFQLPPVFNFPKSQLQCYGESVYCTSSNLLSQCNSGQSPLDRFTSVVAWSISTTRPTSFGVAPYNSTLGETHHVSKGNLNVLVEQVSLNPPVSALHATDEKENIEMIWCQQPVPKFRGTSIEAQVHGKRLLKLQNHGETYEMNSPHLSIRILPVPGIDWVGNVNIRCPETGLVAEISYRSSHSFLGFGGSRKLIKGKILDSSLLKVLFEVDGHWDKIVRVKDTNSGEVRVIYDAKEAISGLKTPIIKDVESVWPTESALVWSELSQAIMNKDWERAREAKQDVEERQRNMLRDRAMKGETWFPKNFRVSYSKDTWEWDCSPTHKWVPEAPIIAQ*