Glyma17g06680 - SoyBase

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Report for Sequence Feature Glyma17g06680

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4768353
stop:	4770399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48175	AT	Annotation by Michelle Graham. TAIR10: Cytidine/deoxycytidylate deaminase family protein \| chr1:17790957-17792066 FORWARD LENGTH=182	SoyBase	E_val: 3.00E-90	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1018	KOG	Cytosine deaminase FCY1 and related enzymes	JGI		ISS
PTHR11079	Panther	CYTOSINE DEAMINASE	JGI		ISS
PTHR11079:SF9	Panther	CYTIDINE/DEOXYCYTIDYLATE DEAMINASE-RELATED	JGI		ISS
PF00383	PFAM	Cytidine and deoxycytidylate deaminase zinc-binding region	JGI		ISS
UniRef100_A2Q4B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CMP/dCMP deaminase, zinc-binding n=1 Tax=Medicago truncatula RepID=A2Q4B8_MEDTR	SoyBase	E_val: 2.00E-104	ISS
UniRef100_UPI000233E241	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E241 related cluster n=1 Tax=unknown RepID=UPI000233E241	SoyBase	E_val: 8.00E-133	ISS

Expression Patterns of Glyma17g06680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06680

Paralog	Evidence	Comments
Glyma13g00530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g059300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g06680

Limit To All Plant Sequences

>Glyma17g06680.2   sequence type=transcript   gene model=Glyma17g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAACTTCTCAATCTGTTTTTCTAAACTGTTTTTATTTTAAAAAATATATTTTCTCTTGAGAAACAAATCTTATTGAATACACTTATCTTAAAATTGATTTTTCCCTCTTTGTTCTCAAGATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGAAGTTTAATTTGTATATAACCAGTTACTGATATGGTTATCAGTCATGGCCTGAGGATCTGTGCTACCGTAGCATTTTGGGCAGGTTGAAGCTGTTATTGAATGCCATACAGGGCTTTTTAATTCGAAAAATCAACTTCATGTATTGATTATTAATGTATGATTTGAAAGATGAATCAGGGGTTGCCGTTTGAAATGAATCTTACTGGATTAAGTTCATGCTAATTGCCAAACGGAATTTAAGCTTTTCAATTTTGTTAAATATTTGTTTTCTGAAGGTGCAGTGAGTTTCCATTTTTTGTATACGCAGTACGTAATTTCATAGTTATGTTGATATGGTCTATTCGGGGATTTGCACGTTCAACCTATACTACTAATGTACCT

Coding sequences of Glyma17g06680

Limit To All Plant Sequences

>Glyma17g06680.1   sequence type=CDS   gene model=Glyma17g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACCTATTGTATTTGTTGCCAGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGA

>Glyma17g06680.2   sequence type=CDS   gene model=Glyma17g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGA

Predicted protein sequences of Glyma17g06680

Limit To All Plant Sequences

>Glyma17g06680.1   sequence type=predicted peptide   gene model=Glyma17g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPIVFVARCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQA*

>Glyma17g06680.2   sequence type=predicted peptide   gene model=Glyma17g06680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPETLTFMELAIQQAKLALDVLEVPVGCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQA*

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