Glyma17g06610 - SoyBase

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Report for Sequence Feature Glyma17g06610

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4728732
stop:	4735414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57150	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:23152361-23154872 FORWARD LENGTH=247	SoyBase	E_val: 2.00E-82	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11514	Panther	MYC	JGI		ISS
PTHR11514:SF7	Panther	B-MYC PROTO-ONCOGENE	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IG90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH n=1 Tax=Medicago truncatula RepID=G7IG90_MEDTR	SoyBase	E_val: 7.00E-125	ISS
UniRef100_I1MSK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSK8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06610

Paralog	Evidence	Comments
Glyma13g00480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g058600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g06610

Limit To All Plant Sequences

>Glyma17g06610.2   sequence type=transcript   gene model=Glyma17g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGCCGCACAGACCACACATTGTTTGACTGTCTGGATGGATGTTTCGAGGAAGCAGCAAATTAAACATCGGAAACAAAGAGAGAGAGAGAGAGAGAGCATGACAGACGAACAGCAACATCAATTCCCATCATCGATGGTCTCCTCTCCCCTATATATACATATATACCACGCAGAAGTGGAAAATAAAAGTGAAGAAAACAGACCAAAAATAGAAAGAAAGAGAAATACCAAAACCTTGGCGCATCATATTCTTTATTCCCTCACTTGGATCGTTAATTCCGCGAACGAGCTTCTGCCCTTCAAATTAACCATGGAGAATATTGGTGAGGAGTACGGCTACTGGCCGGAGAACGACATGCTTTTCCAAAACGAAGACCTTGGCAGCTGGGCGATAATGGATGAGGCAGCGTTATCAGGGTCAGGGTACTATGATTCAAGCTCCCCGGACGGTACTGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCTCTAAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGACCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAATAAACTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCCAAGAAGAAGAGAACAGAACAGCTATTCGGTTCTGTCAGTTCAAGAAATTCTCCAATTGAAATAATTGACGTATAACTCTTAACTCATCACTCTCTTGTATATTTTATATTAGTTAATATACATAAACTCTTGGGGCTATTATTTTCATTACTATAACATTTTTTATCTTAAAATTGAGTGTATAAGTTCATGAGTTGAAAAAATATGTAATAAATAGTTTTAATATTGTTTTGAATATGCTTAAGGTCCTTAATTATAAATATAGCACACTATATTTTCGG

Coding sequences of Glyma17g06610

Limit To All Plant Sequences

>Glyma17g06610.1   sequence type=CDS   gene model=Glyma17g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTTCGAGGAAGCAGCAAATTAAACATCGGAAACAAAGAGAGAGAGAGAGAGAGAGCATGACAGACGAACAGCAACATCAATTCCCATCATCGATGGTCTCCTCTCCCCTATATATACATATATACCACGCAGAAGTGGAAAATAAAAGTGAAGAAAACAGACCAAAAATAGAAAGAAAGAGAAATACCAAAACCTTGGCGCATCATATTCTTTATTCCCTCACTTGGATCGTTAATTCCGCGAACGAGCTTCTGCCCTTCAAATTAACCATGGAGAATATTGGTGAGGAGTACGGCTACTGGCCGGAGAACGACATGCTTTTCCAAAACGAAGACCTTGGCAGCTGGGCGATAATGGATGAGGCAGCGTTATCAGGGTCAGGGTACTATGATTCAAGCTCCCCGGACGGTACTGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCTCTAAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGACCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAATAAACTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCCAAGAAGAAGAGAACAGAACAGCTATTCGGTTCTGTCAGTTCAAGAAATTCTCCAATTGAAATAATTGACCTGAGGGTAACATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGTGCGGTGTTCGAATCTTTAAAGCTGAAAGTCATTACGGCCAATATCACTTCTTTTTCAGGCACGCTTCTGAAGACAGTCTTCATCCAGGCAGATGAAGAAGAGAGAGACTTTTTGCATATAAAAATTCAGACAGCGATTTCAGCTCTCAATGATCCTCTAAGCCCAATGAGTATCTGA

>Glyma17g06610.2   sequence type=CDS   gene model=Glyma17g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTTCGAGGAAGCAGCAAATTAAACATCGGAAACAAAGAGAGAGAGAGAGAGAGAGCATGACAGACGAACAGCAACATCAATTCCCATCATCGATGGTCTCCTCTCCCCTATATATACATATATACCACGCAGAAGTGGAAAATAAAAGTGAAGAAAACAGACCAAAAATAGAAAGAAAGAGAAATACCAAAACCTTGGCGCATCATATTCTTTATTCCCTCACTTGGATCGTTAATTCCGCGAACGAGCTTCTGCCCTTCAAATTAACCATGGAGAATATTGGTGAGGAGTACGGCTACTGGCCGGAGAACGACATGCTTTTCCAAAACGAAGACCTTGGCAGCTGGGCGATAATGGATGAGGCAGCGTTATCAGGGTCAGGGTACTATGATTCAAGCTCCCCGGACGGTACTGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCTCTAAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGACCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAATAAACTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCCAAGAAGAAGAGAACAGAACAGCTATTCGGTTCTGTCAGTTCAAGAAATTCTCCAATTGAAATAATTGACGTATAA

Predicted protein sequences of Glyma17g06610

Limit To All Plant Sequences

>Glyma17g06610.1   sequence type=predicted peptide   gene model=Glyma17g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVSRKQQIKHRKQRERERESMTDEQQHQFPSSMVSSPLYIHIYHAEVENKSEENRPKIERKRNTKTLAHHILYSLTWIVNSANELLPFKLTMENIGEEYGYWPENDMLFQNEDLGSWAIMDEAALSGSGYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLFALRAVVPNITKMDKASIIKDAIEYIQHLHDQEKRIQAEILDLESGNKLKNPTYEFDQDLPILLRSKKKRTEQLFGSVSSRNSPIEIIDLRVTYMGEKTFVVSLTCSKRTDTMVKLCAVFESLKLKVITANITSFSGTLLKTVFIQADEEERDFLHIKIQTAISALNDPLSPMSI*

>Glyma17g06610.2   sequence type=predicted peptide   gene model=Glyma17g06610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVSRKQQIKHRKQRERERESMTDEQQHQFPSSMVSSPLYIHIYHAEVENKSEENRPKIERKRNTKTLAHHILYSLTWIVNSANELLPFKLTMENIGEEYGYWPENDMLFQNEDLGSWAIMDEAALSGSGYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLFALRAVVPNITKMDKASIIKDAIEYIQHLHDQEKRIQAEILDLESGNKLKNPTYEFDQDLPILLRSKKKRTEQLFGSVSSRNSPIEIIDV*

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