SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29890 | AT | Annotation by Michelle Graham. TAIR10: choline monooxygenase, putative (CMO-like) | chr4:14608868-14610905 FORWARD LENGTH=422 | SoyBase | E_val: 0 | ISS |
| GO:0006725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular aromatic compound metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| PTHR21266 | Panther | IRON-SULFUR DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR21266:SF2 | Panther | CHOLINE MONOOXYGENASE | JGI | ISS | |
| PF00355 | PFAM | Rieske [2Fe-2S] domain | JGI | ISS | |
| PF00848 | PFAM | Ring hydroxylating alpha subunit (catalytic domain) | JGI | ISS | |
| UniRef100_G7JTA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Choline monooxygenase n=1 Tax=Medicago truncatula RepID=G7JTA1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MSJ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSJ9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g06510 not represented in the dataset |
Glyma17g06510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g057700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g06510.2 sequence type=transcript gene model=Glyma17g06510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGAAACAAAGTCAAAGGAACACAAATGCAGATGCAAATGGCGATGAACATTCAGCTGACACCTTTTATTTCTAATCCCCGACAAGGACAACTCCTGAACCTTAATTTTCCAAACAAACATTCAACACTCACTTGTTGCGCTATTCGTAATTCAGACCTCAAACTATCTCAGACTCAGAGACTTGTCCATCACTTCAATCCCAAAACTCCCATAGAGGAAGCCGTTACTCCCCCAACATCATGGTACACTCATCCCTCTTTCTTCCACCTTGAGCTCGATCGTGTCTTCTACAGAGGCTGGCAAGTTGTGGGATCCACAGAGCAGATAAAGGATCCCCGTGACTATTTCACTGGAAGACTAGGAGATGTGGAATATGTGGTCTGTCGAGATGATAGTGGCATTGTCCGTGCCTTTCACAATGTCTGTCGTCATCATGCTTCTCTTCTTGCTTATGGAAGTGGAAAGAAGTCCTGCTTTGTCTGCCCTTATCATGGGTGGACATATGGATTCAATGGAGCACTTCTCAAGGCAACTAGAATATCAGGAATGCGAAATTTCAATGTAAATGATTTTGGCCTTTTGCCAATGAAAGTAGCTACCTGGGGACCTTTTGTTCTTCTCAATTTGGAAAAAGAGAATCTTTCTAAGAAGGAAGTTGATAGCCATAATGTGTCAAAGGAATGGCTTGGTAGCTCTTCAGAAATACTGAGTACCAATGGAGTTGATTCTTCACTAAGTTATGTTTGTAGACGTGAATACACAATTGAATGCAATTGGAAGGTATTCTGTGATAACTACTTAGATGGTGGCTATCATGTGCCATATGCACATAAAGGCCTTGCATCTGGTCTTAAGCTGGACTCCTATTCTATCACAGTATGGACCTTGGATGGACACCAATCTTGTGGTTCCACTAGGACCCAACAAATGTCAAGTAATATTTGACTACTATCTTGAACATTCTCTGAAGGATGACAAAGATTTCATAGAAAAAAGTTTACAAGATAGTGAGAAAGTGCAGATAGAAGATATTGTGTTGTGTGAAGGTGTCCAGAAGGGCCTCCAGTCCCCAGCATATCGTGTGGGCAGATATGCTCCAACGGTTGAGCAGGCCATGCACCATTTTCATTGTCTGCTCTATGAAAACCTTGCAAAATAAATCCCCGTCAGTGACATGTAATTATACCTTTTAAGAGTAAAAAATGTCACGTGAAAATTGGTCAAGACTATATCTAGTCCGAAACCATGTAATAGTTTGTTGTCAATTTAAGATAATAAAATAATAAACTACTGCTGCAATCAATAAGCAGAGACATACTTGCACTGGGTGTTTGGCTGAATATGAAATTGATGGGTGTTGTGTAAATACACCATTTGTGAGTATTCTGTTATTTTAATCAGTCTCTCGAAGTTGACATATCACAGGCTTGTCTGACAGACTTGCAATAGTTGTGGCCTTACAAATCTCTTGCTGAACTTATTAGCTGTTTGGAATTACCGAGGATCATTGTGATTGTTGTGTAATTCAAATTTGCTGGCGTCAATAGGACATGTTTTATTCTTCCAGTTTAAATTATGGCCATGCGGACTGGGGGAACTAATGCTTAAAAATATCAGATCTCCTAAGATTGAAAAATTGGCGTACCTGAGAATTATTGTACAGTAAAAATATCAGATCTTACGTTTTTTCAAATTATATTACTCTTTATTTTTTCTTTGTTCACATTTCAATTGCTTTTCTCAAAATCTAATTACTTCTAAAATCATCTTAATTTTTTCCTTATTTTTTTTAATTAATTATACCCAAC
>Glyma17g06510.1 sequence type=CDS gene model=Glyma17g06510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATGCAAATGGCGATGAACATTCAGCTGACACCTTTTATTTCTAATCCCCGACAAGGACAACTCCTGAACCTTAATTTTCCAAACAAACATTCAACACTCACTTGTTGCGCTATTCGTAATTCAGACCTCAAACTATCTCAGACTCAGAGACTTGTCCATCACTTCAATCCCAAAACTCCCATAGAGGAAGCCGTTACTCCCCCAACATCATGGTACACTCATCCCTCTTTCTTCCACCTTGAGCTCGATCGTGTCTTCTACAGAGGCTGGCAAGTTGTGGGATCCACAGAGCAGATAAAGGATCCCCGTGACTATTTCACTGGAAGACTAGGAGATGTGGAATATGTGGTCTGTCGAGATGATAGTGGCATTGTCCGTGCCTTTCACAATGTCTGTCGTCATCATGCTTCTCTTCTTGCTTATGGAAGTGGAAAGAAGTCCTGCTTTGTCTGCCCTTATCATGGGTGGACATATGGATTCAATGGAGCACTTCTCAAGGCAACTAGAATATCAGGAATGCGAAATTTCAATGTAAATGATTTTGGCCTTTTGCCAATGAAAGTAGCTACCTGGGGACCTTTTGTTCTTCTCAATTTGGAAAAAGAGAATCTTTCTAAGAAGGAAGTTGATAGCCATAATGTGTCAAAGGAATGGCTTGGTAGCTCTTCAGAAATACTGAGTACCAATGGAGTTGATTCTTCACTAAGTTATGTTTGTAGACGTGAATACACAATTGAATGCAATTGGAAGGTATTCTGTGATAACTACTTAGATGGTGGCTATCATGTGCCATATGCACATAAAGGCCTTGCATCTGGTCTTAAGCTGGACTCCTATTCTATCACAATGTTTGAAAGGGTTAGCATCCAAAGTTGTGAAGGCAGCTCAGAGAAAAACAAAGGGAATTATGATCGACTTGGAAGAAAAGCTATATATGCTTTTGTTTACCCTAACTTCATGATAAATAGGTATGGACCTTGGATGGACACCAATCTTGTGGTTCCACTAGGACCCAACAAATGTCAAGTAATATTTGACTACTATCTTGAACATTCTCTGAAGGATGACAAAGATTTCATAGAAAAAAGTTTACAAGATAGTGAGAAAGTGCAGATAGAAGATATTGTGTTGTGTGAAGGTGTCCAGAAGGGCCTCCAGTCCCCAGCATATCGTGTGGGCAGATATGCTCCAACGGTTGAGCAGGCCATGCACCATTTTCATTGTCTGCTCTATGAAAACCTTGCAAAATAA >Glyma17g06510.2 sequence type=CDS gene model=Glyma17g06510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATGCAAATGGCGATGAACATTCAGCTGACACCTTTTATTTCTAATCCCCGACAAGGACAACTCCTGAACCTTAATTTTCCAAACAAACATTCAACACTCACTTGTTGCGCTATTCGTAATTCAGACCTCAAACTATCTCAGACTCAGAGACTTGTCCATCACTTCAATCCCAAAACTCCCATAGAGGAAGCCGTTACTCCCCCAACATCATGGTACACTCATCCCTCTTTCTTCCACCTTGAGCTCGATCGTGTCTTCTACAGAGGCTGGCAAGTTGTGGGATCCACAGAGCAGATAAAGGATCCCCGTGACTATTTCACTGGAAGACTAGGAGATGTGGAATATGTGGTCTGTCGAGATGATAGTGGCATTGTCCGTGCCTTTCACAATGTCTGTCGTCATCATGCTTCTCTTCTTGCTTATGGAAGTGGAAAGAAGTCCTGCTTTGTCTGCCCTTATCATGGGTGGACATATGGATTCAATGGAGCACTTCTCAAGGCAACTAGAATATCAGGAATGCGAAATTTCAATGTAAATGATTTTGGCCTTTTGCCAATGAAAGTAGCTACCTGGGGACCTTTTGTTCTTCTCAATTTGGAAAAAGAGAATCTTTCTAAGAAGGAAGTTGATAGCCATAATGTGTCAAAGGAATGGCTTGGTAGCTCTTCAGAAATACTGAGTACCAATGGAGTTGATTCTTCACTAAGTTATGTTTGTAGACGTGAATACACAATTGAATGCAATTGGAAGGTATTCTGTGATAACTACTTAGATGGTGGCTATCATGTGCCATATGCACATAAAGGCCTTGCATCTGGTCTTAAGCTGGACTCCTATTCTATCACAGTATGGACCTTGGATGGACACCAATCTTGTGGTTCCACTAGGACCCAACAAATGTCAAGTAATATTTGA
>Glyma17g06510.1 sequence type=predicted peptide gene model=Glyma17g06510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQMQMAMNIQLTPFISNPRQGQLLNLNFPNKHSTLTCCAIRNSDLKLSQTQRLVHHFNPKTPIEEAVTPPTSWYTHPSFFHLELDRVFYRGWQVVGSTEQIKDPRDYFTGRLGDVEYVVCRDDSGIVRAFHNVCRHHASLLAYGSGKKSCFVCPYHGWTYGFNGALLKATRISGMRNFNVNDFGLLPMKVATWGPFVLLNLEKENLSKKEVDSHNVSKEWLGSSSEILSTNGVDSSLSYVCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLKLDSYSITMFERVSIQSCEGSSEKNKGNYDRLGRKAIYAFVYPNFMINRYGPWMDTNLVVPLGPNKCQVIFDYYLEHSLKDDKDFIEKSLQDSEKVQIEDIVLCEGVQKGLQSPAYRVGRYAPTVEQAMHHFHCLLYENLAK* >Glyma17g06510.2 sequence type=predicted peptide gene model=Glyma17g06510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQMQMAMNIQLTPFISNPRQGQLLNLNFPNKHSTLTCCAIRNSDLKLSQTQRLVHHFNPKTPIEEAVTPPTSWYTHPSFFHLELDRVFYRGWQVVGSTEQIKDPRDYFTGRLGDVEYVVCRDDSGIVRAFHNVCRHHASLLAYGSGKKSCFVCPYHGWTYGFNGALLKATRISGMRNFNVNDFGLLPMKVATWGPFVLLNLEKENLSKKEVDSHNVSKEWLGSSSEILSTNGVDSSLSYVCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLKLDSYSITVWTLDGHQSCGSTRTQQMSSNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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